PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553329.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 332aa    MW: 35167.8 Da    PI: 5.9866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553329.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10179223554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P++      K + a++L   v+Y+k L
  XP_010553329.1 179 HSIAERLRRERIAERMKALQELVPTC-----NKTDRAAMLDDIVDYVKFL 223
                     99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.41E-11172228No hitNo description
SuperFamilySSF474599.29E-16172234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.539174223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-16176234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-7179223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-12180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSGNHHQQDG MGDDFFEQIL AVPPGYGGGG GGEIGGTSSS SSMPMMLQLG SAGGGVDGGG  60
GFRGLSMGSM MGLGLNLEHH GFLRPADNSN DTDNAAPTVA SINGRESLHM AGLFPAFGQL  120
QAPTVRPTGP SHLPPGPPQL HQMQRFHGQP PPGTVPPALN PPTIRPRVRA RRGQATDPHS  180
IAERLRRERI AERMKALQEL VPTCNKTDRA AMLDDIVDYV KFLRLQVKVL SMSRLGATGA  240
VAQLVADVPL PSVEGDDGGT SEPAWERWSN DGTEEQVAKL MEEDVGAAMQ FLQSKALCIM  300
PVSLASAIFS THPQPSSDQP PMIPKPEMNN PP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553329.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553329.10.0PREDICTED: transcription factor bHLH7-like
SwissprotO227686e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2C9VCK21e-135A0A2C9VCK2_MANES; Uncharacterized protein
STRINGXP_010553329.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]