PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553316.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 338aa    MW: 37402.1 Da    PI: 10.2461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553316.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.93.7e-32160216360
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     DgynWrKYGqK+vkgsefprsYY+Ct+ +Cp+kkkve s  d+k+ e++Y+geHnh+k
  XP_010553316.1 160 DGYNWRKYGQKQVKGSEFPRSYYKCTHINCPTKKKVESSL-DGKMSEVVYQGEHNHPK 216
                     9***************************************.***************85 PP
2WRKY33.86.7e-11311332223
                     --SS-EEEEEEE--TT-SS-EE CS
            WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                     +Dg++WrKYGqK+v g++fprs
  XP_010553316.1 311 EDGFRWRKYGQKVVGGNPFPRS 332
                     8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-28150217IPR003657WRKY domain
SMARTSM007741.1E-33158216IPR003657WRKY domain
SuperFamilySSF1182901.57E-24159217IPR003657WRKY domain
PfamPF031063.5E-25160215IPR003657WRKY domain
PROSITE profilePS5081123.525160217IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-9300332IPR003657WRKY domain
PROSITE profilePS5081112.691305332IPR003657WRKY domain
SuperFamilySSF1182908.24E-8306332IPR003657WRKY domain
SMARTSM007740.0035310335IPR003657WRKY domain
PfamPF031061.9E-6311332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEMKKAERVV IVKPVASRPS CSGFRTFTEL LTKSVTLSPT KRFHETVVSA IKPKTARVSP  60
LFPQPRGEVS SDDQRATESF VVYKPKAKVV SKATISVLAK MLQGKVSVDH RQGPLKQNEV  120
PLQNSSRDGR QCFQKVPTFA EAEANARSSE TSTGDRSSLD GYNWRKYGQK QVKGSEFPRS  180
YYKCTHINCP TKKKVESSLD GKMSEVVYQG EHNHPKPRLP PRSSTSSRGS AREDPVGCPP  240
RRNMTGSSVS AASGSAVRTS DSCCRSGDHD GEIEGLYGEL DDPKSKRRKN EHRTREAGVS  300
EEGSVDSEAL EDGFRWRKYG QKVVGGNPFP RSRPPFMC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-161602171674WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553316.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553316.10.0PREDICTED: WRKY transcription factor 44 isoform X2
SwissprotQ9ZUU01e-105WRK44_ARATH; WRKY transcription factor 44
TrEMBLA0A384L2V31e-103A0A384L2V3_ARATH; WRKY44
TrEMBLA7BI371e-103A7BI37_ARATH; WRKY transcription factor
TrEMBLV4M7R81e-103V4M7R8_EUTSA; Uncharacterized protein
STRINGXP_010553314.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.14e-98WRKY family protein
Publications ? help Back to Top
  1. Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
    Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
    Bioinformatics, 2012. 28(6): p. 815-22
    [PMID:22271267]
  2. Simon M, et al.
    Tissue-specific profiling reveals transcriptome alterations in Arabidopsis mutants lacking morphological phenotypes.
    Plant Cell, 2013. 25(9): p. 3175-85
    [PMID:24014549]
  3. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]
  4. Verweij W, et al.
    Functionally Similar WRKY Proteins Regulate Vacuolar Acidification in Petunia and Hair Development in Arabidopsis.
    Plant Cell, 2016. 28(3): p. 786-803
    [PMID:26977085]
  5. Gonzalez A, et al.
    TTG2 controls the developmental regulation of seed coat tannins in Arabidopsis by regulating vacuolar transport steps in the proanthocyanidin pathway.
    Dev. Biol., 2016. 419(1): p. 54-63
    [PMID:27046632]
  6. Hassani-Pak K, et al.
    Developing integrated crop knowledge networks to advance candidate gene discovery.
    Appl Transl Genom, 2016. 11: p. 18-26
    [PMID:28018846]