PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 384aa MW: 42571.8 Da PI: 10.1266 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.5e-32 | 160 | 216 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgsefprsYY+Ct+ +Cp+kkkve s d+k+ e++Y+geHnh+k XP_010553314.1 160 DGYNWRKYGQKQVKGSEFPRSYYKCTHINCPTKKKVESSL-DGKMSEVVYQGEHNHPK 216 9***************************************.***************85 PP | |||||||
2 | WRKY | 102.9 | 1.8e-32 | 311 | 368 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+v g++fprsYYrCts+gC ++k+ver+++dp ++++tYeg+H+h+ XP_010553314.1 311 EDGFRWRKYGQKVVGGNPFPRSYYRCTSSGCGARKHVERASDDPAAFITTYEGKHTHQ 368 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 9.5E-28 | 150 | 217 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-33 | 158 | 216 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-24 | 159 | 217 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.525 | 160 | 217 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-25 | 160 | 215 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.9E-32 | 300 | 370 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.247 | 305 | 370 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.68E-28 | 306 | 370 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.2E-39 | 310 | 369 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.9E-27 | 311 | 368 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MEMKKAERVV IVKPVASRPS CSGFRTFTEL LTKSVTLSPT KRFHETVVSA IKPKTARVSP 60 LFPQPRGEVS SDDQRATESF VVYKPKAKVV SKATISVLAK MLQGKVSVDH RQGPLKQNEV 120 PLQNSSRDGR QCFQKVPTFA EAEANARSSE TSTGDRSSLD GYNWRKYGQK QVKGSEFPRS 180 YYKCTHINCP TKKKVESSLD GKMSEVVYQG EHNHPKPRLP PRSSTSSRGS AREDPVGCPP 240 RRNMTGSSVS AASGSAVRTS DSCCRSGDHD GEIEGLYGEL DDPKSKRRKN EHRTREAGVS 300 EEGSVDSEAL EDGFRWRKYG QKVVGGNPFP RSYYRCTSSG CGARKHVERA SDDPAAFITT 360 YEGKHTHQMP FRHAPPQADI PRIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-29 | 160 | 370 | 6 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-29 | 160 | 370 | 6 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development. {ECO:0000269|PubMed:12084832}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553314.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by salicylic acid or wounding. {ECO:0000269|PubMed:12084832}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553314.1 | 0.0 | PREDICTED: WRKY transcription factor 44 isoform X1 | ||||
Refseq | XP_010553315.1 | 0.0 | PREDICTED: WRKY transcription factor 44 isoform X1 | ||||
Swissprot | Q9ZUU0 | 1e-131 | WRK44_ARATH; WRKY transcription factor 44 | ||||
TrEMBL | V4M7R8 | 1e-129 | V4M7R8_EUTSA; Uncharacterized protein | ||||
STRING | XP_010553314.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8362 | 27 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.1 | 1e-124 | WRKY family protein |