PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010553303.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 175aa    MW: 19585.4 Da    PI: 9.0562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010553303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000284668123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C+k+Fs+   L  H  +H
  XP_010553303.1 46 FECKTCNKRFSSFQALGGHRASH 68
                    89**********99999998887 PP
2zf-C2H213.30.0002489111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C +sF +   L  H+r+H
  XP_010553303.1  89 HECSICRQSFGSGQALGGHMRRH 111
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.79E-845111No hitNo description
PfamPF139122.7E-124570IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.5334673IPR007087Zinc finger, C2H2
SMARTSM003550.0934668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139121.7E-1188113IPR007087Zinc finger, C2H2
SMARTSM003550.04289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.07889111IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRERSDYEN SIKSLDIAKY LILLSETFAN TPMVTNQSVN EDTNHFECKT CNKRFSSFQA  60
LGGHRASHKK PKLVGEPKHN NGADNDKTHE CSICRQSFGS GQALGGHMRR HRAVISAEPV  120
ILCPKLPAVL PVLKRCNSSK RVLSLDLNLT PLENDLEYVL GNTYLSPKID MNFVS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010553303.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010553303.11e-129PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD42e-74ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A178VNJ84e-72A0A178VNJ8_ARATH; ZAT11
STRINGXP_010553303.11e-128(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-77C2H2 family protein