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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010553148.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 183aa MW: 20335.7 Da PI: 8.6021 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.1 | 6.5e-05 | 50 | 72 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs++ L H++ H XP_010553148.1 50 FSCSFCKKEFSTSQALGGHQNAH 72 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.77E-7 | 48 | 78 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.6E-6 | 48 | 78 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.4E-6 | 49 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.739 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEDKPCPSNS SGSVSSSSMK ENPRLELRLL LEEKTREGGQ SEGGRAARVF SCSFCKKEFS 60 TSQALGGHQN AHKQERAFAK RRKEIELEYP SLSLPFANRT CYNLYDPVMG RSKVYPFNAM 120 GYPLGSYRGF SMTSLLGDRT NDDLSKNLIS KLDKDKDKDE GGKEEQSGSE SRTASGIDLS 180 LRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010553148.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010553148.1 | 1e-132 | PREDICTED: zinc finger protein 2 | ||||
TrEMBL | D7M6E6 | 2e-40 | D7M6E6_ARALL; Zinc finger family protein | ||||
STRING | XP_010553148.1 | 1e-131 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8738 | 26 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01860.1 | 1e-25 | C2H2 family protein |