PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552999.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 289aa MW: 31408 Da PI: 9.819

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552999.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H XP_010552999.1 123 YQCKTCDRSFPSFQALGGHRASH 145 9***********99999998887 PP
2	zf-C2H2	11.5	0.00093	200	222	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs+ L H+r+H XP_010552999.1 200 HECSICKAEFSSGQALGGHMRRH 222 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.95E-8	122	145	No hit	No description
Pfam	PF13912	1.2E-12	122	147	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.575	123	150	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.032	123	145	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	125	145	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.95E-8	195	222	No hit	No description
Pfam	PF13912	5.4E-13	199	224	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.031	200	222	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.787	200	227	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	202	222	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTTVHEDGGD IARLTIKRKR TKRQRTASPP TAAAAGELSG EREEEEEVTR ELVGGTEHVL 60 KGAANEDEDM ANCLMLLAQG RKRNGDRRHQ TQKPGFLSNR RTPPSSTSSQ AGLGLGLGLE 120 GVYQCKTCDR SFPSFQALGG HRASHKKPKT GPNAGRDLNS GEKKFAFAVG ENRESDQSVL 180 GRFLSLQVTS SSSKKTDKTH ECSICKAEFS SGQALGGHMR RHRSIPTATA NAAVGESESS 240 PDRISREESK RQRNFLGLDL NLPAPEDDRS DKPKFTFASK DQILVFAAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552999.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552999.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A178U6H4	3e-86	A0A178U6H4_ARATH; Uncharacterized protein
TrEMBL	Q9LZD5	3e-86	Q9LZD5_ARATH; C2H2-type zinc finger family protein
STRING	XP_010552999.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6347	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	4e-64	C2H2 family protein