 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010552813.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
YABBY |
| Protein Properties |
Length: 239aa MW: 26955.2 Da PI: 6.74 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010552813.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 207.8 | 3.9e-64 | 6 | 183 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntila...........vsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeen 81
++f+ ++q+C+vqC+fC+til+ vsvP++sl+kvvtvrCGhCtsllsvn++kas +l+a+ h ++++ke++ + + e+e+
XP_010552813.1 6 QLFDLPGQICHVQCGFCTTILLivyddgddddqVSVPFSSLSKVVTVRCGHCTSLLSVNMMKASfipfHLIASLTH-HDQGKEDIIKAT-AEQEA 98
78999***************96555555555558****************************99888888999998.556666666543.44556 PP
YABBY 82 lksnvekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
+k+++ ke s++ v+ s+nede+vprv + v++PPe+rqr+Psayn+fikeei r+ka+nP+i+h+eafs+aaknWahfP++h++
XP_010552813.1 99 CKVHQAKEYSPN-LVA---YSDNEDEDVPRVNQvVNKPPERRQRAPSAYNCFIKEEISRLKAQNPNIAHKEAFSLAAKNWAHFPRVHHK 183
666655554443.333...389**********9899***************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MTTLNQLFDL PGQICHVQCG FCTTILLIVY DDGDDDDQVS VPFSSLSKVV TVRCGHCTSL 60
LSVNMMKASF IPFHLIASLT HHDQGKEDII KATAEQEACK VHQAKEYSPN LVAYSDNEDE 120
DVPRVNQVVN KPPERRQRAP SAYNCFIKEE ISRLKAQNPN IAHKEAFSLA AKNWAHFPRV 180
HHKRGADQCF SQEVQNAPYN SLHDSANHEF CLPGHEEGSN GYRERKAPRH SIWGKSPFE
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
|
