PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 521aa    MW: 56349.3 Da    PI: 6.9801
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552794.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.7e-09367415355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_010552794.1 367 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 415
                     58*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.23E-17362432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.19E-11362419No hitNo description
PROSITE profilePS5088815.478364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-17365432IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MDHIGDKDKF AVEKNSSVNN VSCDSVNKPA DWRVCVSNPV SLPTDSYPPG DPMSVGPSSF  60
SQSQMMNSFS KALWHDPSSV QTTGFGSFSV QTDAGSSGVL GVADGNLGSF RNNVDRPLET  120
GWNLSNPLPN GDILLLPNAN GFFPHSMAQI PADSGFITRA ARFSCYGSGI FGEMLNQPLG  180
VPEPIGLYSQ VCGTMQRLQD MPVGTVAKQA HGGQCSGNEL NVGELPKDAS TAVRDGFKND  240
AGTVIHVGAN EEVKVDKPGC SHMSDETRSS GGNGRNELQV GELKSGETPS KCFDRKKRKI  300
NSQGYEPNQS SRALQSGEEP DNNGEKKENY ERNTNLSPKK TSGGKQASDP PKEGYIHMRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP QLELNLDGLM AKEALQLRPG PSSAPPFPQS IMPMAYPPLP HLSQPGFMEP  480
TLSCMRNPSD VLRQTVTSPL SPMNEGGFKR PVYSLALSVS E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552794.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552544.10.0PREDICTED: transcription factor bHLH49-like isoform X1
SwissprotQ9CAA91e-163BH049_ARATH; Transcription factor bHLH49
TrEMBLR0GH971e-174R0GH97_9BRAS; Uncharacterized protein
STRINGXP_010552794.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-155bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]