PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552554.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 368aa    MW: 40993.8 Da    PI: 8.7376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00057312334123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_010552554.1 312 HECPICFRVFKSGQALGGHKRSH 334
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0621133IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3671138IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-71233No hitNo description
Gene3DG3DSA:3.30.160.606.8E-41335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
PfamPF139121.1E-61335IPR007087Zinc finger, C2H2
SuperFamilySSF576672.75E-7307334No hitNo description
SMARTSM003550.14312334IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974312334IPR007087Zinc finger, C2H2
PfamPF139122.7E-10312334IPR007087Zinc finger, C2H2
PROSITE patternPS000280314334IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MITLKQQQQI LLCKECGKGF SSLKALCGHM ACHSDRERMA TDSQSDSETS SATIRRRSKR  60
VMKHRKAFVV HRSISASEVE QEEQEELALC LMMLSRDYSN FKKVQNFVNC VGESSDTNSV  120
ILETKSSSGE LKHVGGFRCN ADEISAAKNQ NQLKSPEENG VLLYDSDNSD SGYFRNGPRK  180
VDSDVSIDGF LRNAGSNKAM MESGSEFSNS PAAKQDKNFN RLRNGTEFRK ESYKEGGSSR  240
SSAKYDLRKS KRVSSYSRKK IETNELNESV HDSGENSLEA DSCSDMNHNS SKALIAAAAC  300
KKTRAKKRSK GHECPICFRV FKSGQALGGH KRSHFMGSHH ENSTVVIQQE VTQMHTMIDL  360
NLPAPFDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304310AKKRSKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552554.10.0PREDICTED: zinc finger protein ZAT4-like isoform X2
TrEMBLR0GTA21e-125R0GTA2_9BRAS; Uncharacterized protein
STRINGXP_010552553.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-110C2H2-like zinc finger protein