PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552553.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 446aa    MW: 49964.6 Da    PI: 8.5343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073390412123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  XP_010552553.1 390 HECPICFRVFKSGQALGGHKRSH 412
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-6737IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.22E-7939No hitNo description
PfamPF139120.00291234IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.8841239IPR007087Zinc finger, C2H2
SMARTSM003550.261234IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801436IPR007087Zinc finger, C2H2
SMARTSM003550.06289111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.36789116IPR007087Zinc finger, C2H2
SuperFamilySSF576675.48E-790111No hitNo description
PfamPF139121.4E-691113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-491113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576675.48E-7385412No hitNo description
PROSITE profilePS501578.974390412IPR007087Zinc finger, C2H2
PfamPF139123.4E-10390412IPR007087Zinc finger, C2H2
SMARTSM003550.14390412IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDQMEQSKDR NFVCKFCSKR FSCGKSLGGH IRTHTHENSV DSDEDEADKL KIFDNGGQSS  60
YGLRENPKKN KRFTDQTEMI TLKQQQQILL CKECGKGFSS LKALCGHMAC HSDRERMATD  120
SQSDSETSSA TIRRRSKRVM KHRKAFVVHR SISASEVEQE EQEELALCLM MLSRDYSNFK  180
KVQNFVNCVG ESSDTNSVIL ETKSSSGELK HVGGFRCNAD EISAAKNQNQ LKSPEENGVL  240
LYDSDNSDSG YFRNGPRKVD SDVSIDGFLR NAGSNKAMME SGSEFSNSPA AKQDKNFNRL  300
RNGTEFRKES YKEGGSSRSS AKYDLRKSKR VSSYSRKKIE TNELNESVHD SGENSLEADS  360
CSDMNHNSSK ALIAAAACKK TRAKKRSKGH ECPICFRVFK SGQALGGHKR SHFMGSHHEN  420
STVVIQQEVT QMHTMIDLNL PAPFDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1382388AKKRSKG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010552553.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552553.10.0PREDICTED: zinc finger protein ZAT4-like isoform X1
TrEMBLQ9FZE51e-167Q9FZE5_ARATH; C2H2-like zinc finger protein
STRINGXP_010552553.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-157C2H2-like zinc finger protein