PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 326aa MW: 37152.3 Da PI: 7.4374

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.6	1e-48	45	177	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pGfrFhPtd+elv +yL +kv++k++++ ++ik+vdiyk++Pwd+p + +++e+e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s XP_010552401.1 45 PGFRFHPTDDELVGFYLLRKVQKKPIKM-DIIKHVDIYKFDPWDIP-RSSNTENESYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSDsh 137 9*************************.99***********.5556789**********************************855 PP NAM 96 ...kgel......vglkktLvfykgrapkgektdWvmheyrl 128 + + +glkktLv+y+g+a kg+kt+W+mhe+rl XP_010552401.1 138 kaaG--DqsnsviIGLKKTLVYYRGSAGKGTKTEWMMHEFRL 177 5550..0555666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	50.114	43	207	IPR003441	NAC domain
SuperFamily	SSF101941	3.53E-52	44	207	IPR003441	NAC domain
Pfam	PF02365	6.5E-25	45	177	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MIRQKISSES SEKDPTAMLI GDKIVDHINR GSEEEEDDGD VFPLPGFRFH PTDDELVGFY 60 LLRKVQKKPI KMDIIKHVDI YKFDPWDIPR SSNTENESYF FCKRGRKYRN SIRPNRVTGS 120 GFWKATGIDK PVYSDSHKAA GDQSNSVIIG LKKTLVYYRG SAGKGTKTEW MMHEFRLPTS 180 SDNVNNPNST SSSQEAEVWT LCRIFKRNVS SRKYTPDWRE LASSKRVKQH QPHTSFHQEA 240 YINFGDTDSA DVIPPHINEK NVVANKTNDG NMFHYANQLS ATHAVTTVLP AGPVPEFSND 300 NHQEFSYGNW DELRSMVDFA FGQSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-44	45	213	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-44	45	213	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-44	45	213	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-44	45	213	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-44	45	213	22	174	NAC domain-containing protein 19
3swm_B	1e-44	45	213	22	174	NAC domain-containing protein 19
3swm_C	1e-44	45	213	22	174	NAC domain-containing protein 19
3swm_D	1e-44	45	213	22	174	NAC domain-containing protein 19
3swp_A	1e-44	45	213	22	174	NAC domain-containing protein 19
3swp_B	1e-44	45	213	22	174	NAC domain-containing protein 19
3swp_C	1e-44	45	213	22	174	NAC domain-containing protein 19
3swp_D	1e-44	45	213	22	174	NAC domain-containing protein 19
4dul_A	1e-44	45	213	19	171	NAC domain-containing protein 19
4dul_B	1e-44	45	213	19	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00353	DAP	Transfer from AT3G12910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552401.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552401.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	1e-78	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A087H931	1e-117	A0A087H931_ARAAL; Uncharacterized protein
STRING	XP_010552401.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12910.1	1e-114	NAC family protein

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]