PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010552022.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 517aa MW: 56176.1 Da PI: 8.1448

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010552022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	326	373	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_010552022.1 326 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 373 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.06E-16	320	391	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.37E-9	320	377	No hit	No description
PROSITE profile	PS50888	15.37	322	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-16	322	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-5	326	373	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.7E-10	328	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MENDLFMNTG LPPPPPPLQE LAVLPSSSPA MMNWHLISSS TKTGPPEPNL GRNPTQDCFF 60 WEKSTERSIF DSALSSLVSS PTASNSNLSG GDSFIIRELI GKLGNIDNSS GEIYGNPADS 120 GLCYGTPMRS PPPKKLSSLM MAVKSTTLAE FSGDPGFAER AARFSCFGSR SFNGRATTPF 180 AVDNGAAGGS NTIVAPTVGA NVKLPRVSSS PALKALSSQI CKNTPGSEDQ CPKVSGEFSR 240 KRKSVPKGKP MENTASPSPS SLKEGEGYED PDPKRSKKSE EKGRKEEKEE GELGKGSKKT 300 NSTKPPEAPP KDYIHVRARR GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCNKVTGKAL 360 MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFNVDALVSK DMIAPLHQQL DSTLQSFSGH 420 QQHQRNNLQL HPNISSNYKN TQCPVGPLDT SASSRSFALP TLDQFTDSIP QCPAFYEDDL 480 HSLVQTGFAV CQSETVQMQP QYFQNSNKAS SDMKPEL

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MENDLFMNTG LPPPPPPLQE LAVLPSSSPA MMNWHLISSS TKTGPPEPNL GRNPTQDCFF  60
WEKSTERSIF DSALSSLVSS PTASNSNLSG GDSFIIRELI GKLGNIDNSS GEIYGNPADS  120
GLCYGTPMRS PPPKKLSSLM MAVKSTTLAE FSGDPGFAER AARFSCFGSR SFNGRATTPF  180
AVDNGAAGGS NTIVAPTVGA NVKLPRVSSS PALKALSSQI CKNTPGSEDQ CPKVSGEFSR  240
KRKSVPKGKP MENTASPSPS SLKEGEGYED PDPKRSKKSE EKGRKEEKEE GELGKGSKKT  300
NSTKPPEAPP KDYIHVRARR GQATDSHSLA ERVRREKIGE RMKLLQDLVP GCNKVTGKAL  360
MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFNVDALVSK DMIAPLHQQL DSTLQSFSGH  420
QQHQRNNLQL HPNISSNYKN TQCPVGPLDT SASSRSFALP TLDQFTDSIP QCPAFYEDDL  480
HSLVQTGFAV CQSETVQMQP QYFQNSNKAS SDMKPEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	243	SRKRKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010552022.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488595	2e-94	AF488595.1 Arabidopsis thaliana clone bHLH062 putative bHLH transcription factor mRNA, complete cds.
GenBank	AK175369	2e-94	AK175369.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-80-E17.
GenBank	AK175496	2e-94	AK175496.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL21-92-E09.
GenBank	AK176563	2e-94	AK176563.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL25-09-B02.
GenBank	AK176663	2e-94	AK176663.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH062), complete cds, clone: RAFL25-20-F07.
GenBank	BT026497	2e-94	BT026497.1 Arabidopsis thaliana At3g07340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010552022.1	0.0	PREDICTED: transcription factor bHLH62-like
Swissprot	Q9SRT2	1e-163	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A0D3DBT1	1e-171	A0A0D3DBT1_BRAOL; Uncharacterized protein
STRING	XP_010552022.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2332	27	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-150	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]