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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | CO-like | ||||||||
Protein Properties | Length: 381aa MW: 41189.3 Da PI: 5.4602 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 18.8 | 3.4e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ XP_010551970.1 4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 20 | 1.5e-06 | 46 | 89 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvv 40 +C+++++++++ Ce+ ++ lC++C +H g H+++ XP_010551970.1 46 LVCERCHSQPASVRCEEERVSLCQNCEWLGH-GtsnpssahHKRQ 89 68************************99999.5478888877766 PP | |||||||
3 | CCT | 60.9 | 4.2e-21 | 324 | 367 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k+RkF+K++rY+sRKa+A+ R RvKGrFvk+ XP_010551970.1 324 RSNAVMRYKEKKKSRKFDKRVRYASRKARADVRRRVKGRFVKAG 367 899**************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.527 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.06E-7 | 4 | 47 | No hit | No description |
SMART | SM00336 | 3.7E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.499 | 43 | 91 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.18E-6 | 47 | 91 | No hit | No description |
SMART | SM00336 | 1.3 | 48 | 91 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.368 | 324 | 366 | IPR010402 | CCT domain |
Pfam | PF06203 | 8.0E-16 | 324 | 366 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 381 aa Download sequence Send to blast |
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CHSQPASVRC 60 EEERVSLCQN CEWLGHGTSN PSSAHHKRQT INCYSGCPSS SELASIWSFV SDNSSVGQSA 120 CEQEMGLMSI ADGLRENSIA QDGNVDQPDG SSSVPETSSA AHRMDPPPSL PGSSRLAKGL 180 GVCDDDFYGN LIEDEVDLAL ENYEELFGVA FNASEEFFEN GGLDSLFEKP SAAPEGSSAG 240 LGNTMQPAGS NAASADSFMS AKTDSIICFT SRPAHSNISF SGITGESSAG DYQDCGVSSV 300 RLSGEPPWCP PSSQDNASSQ AASRSNAVMR YKEKKKSRKF DKRVRYASRK ARADVRRRVK 360 GRFVKAGDAY DYDPLSQTRS Y |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551970.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_010551971.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Refseq | XP_010551972.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9LUA9 | 0.0 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A061DL86 | 0.0 | A0A061DL86_THECC; B-box type zinc finger protein with CCT domain isoform 1 | ||||
STRING | XP_010551970.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1682 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 1e-155 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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