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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551936.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 178aa MW: 20260.4 Da PI: 9.313 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.7 | 8.6e-32 | 99 | 157 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tY g H+h XP_010551936.1 99 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHEGCSVKKQVQRLTRDEGVVVTTYDGVHTHA 157 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-33 | 84 | 157 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.19E-28 | 91 | 158 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.805 | 94 | 159 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.2E-37 | 99 | 158 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-26 | 100 | 156 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006817 | Biological Process | phosphate ion transport | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MDNHEYNQML FPCPSSSSSS SAYSSDFHNL LGLSNNSSIN AGEGSSLTQT ATLSRLGNDI 60 EGTDPSGRGD QVNNDKKKKK KKERKERFVF QTRSQVDILD DGYRWRKYGQ KAVKNNRFPR 120 SYYRCTHEGC SVKKQVQRLT RDEGVVVTTY DGVHTHAVDK PSDDFQHILS QMHVYTPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-26 | 90 | 156 | 8 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 1e-26 | 90 | 156 | 8 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 75 | 81 | KKKKKKK |
2 | 76 | 84 | KKKKKKERK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00325 | DAP | Transfer from AT3G01970 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551936.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551936.1 | 1e-133 | PREDICTED: probable WRKY transcription factor 45 isoform X1 | ||||
Swissprot | Q9S763 | 6e-53 | WRK45_ARATH; Probable WRKY transcription factor 45 | ||||
TrEMBL | V7CWD6 | 4e-61 | V7CWD6_PHAVU; Uncharacterized protein | ||||
STRING | XP_010551936.1 | 1e-132 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01970.1 | 3e-53 | WRKY DNA-binding protein 45 |
Publications ? help Back to Top | |||
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