PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551835.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | WRKY | ||||||||
Protein Properties | Length: 1024aa MW: 113565 Da PI: 9.448 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.2 | 1.4e-32 | 191 | 247 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++kg efprsYY+Ct+a+Cpvkkkvers+ d+++++i+Y+g+Hnhe XP_010551835.1 191 DDGYNWRKYGQKPIKGCEFPRSYYKCTHASCPVKKKVERSS-DGQITQIIYKGQHNHE 247 8****************************************.***************8 PP | |||||||
2 | WRKY | 105.3 | 3.2e-33 | 346 | 404 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k+ver+++dpk+v++tYeg+Hnh+ XP_010551835.1 346 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTAGCTVRKHVERASTDPKAVITTYEGKHNHD 404 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-29 | 183 | 249 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.719 | 185 | 249 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-25 | 188 | 249 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-36 | 190 | 248 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.6E-25 | 191 | 247 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.8E-36 | 331 | 406 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-29 | 338 | 406 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.893 | 341 | 406 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-39 | 346 | 405 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-26 | 347 | 404 | IPR003657 | WRKY domain |
SuperFamily | SSF56112 | 1.62E-90 | 541 | 841 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 6.3E-33 | 544 | 646 | No hit | No description |
Pfam | PF00069 | 2.3E-69 | 548 | 833 | IPR000719 | Protein kinase domain |
CDD | cd07840 | 1.52E-143 | 548 | 833 | No hit | No description |
PROSITE profile | PS50011 | 45.149 | 548 | 833 | IPR000719 | Protein kinase domain |
SMART | SM00220 | 3.9E-92 | 548 | 833 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 554 | 577 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 3.4E-55 | 647 | 903 | No hit | No description |
PROSITE pattern | PS00108 | 0 | 668 | 680 | IPR008271 | Serine/threonine-protein kinase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1024 aa Download sequence Send to blast |
MAQDDAPSMR TTALVAPTRP TITIPNRPPA TDAPPIFGGG GDGLSLSPGP LSFVSSLFTD 60 NYQELTPTSE NQRGFFSQLL SGCTASPSAA AGFSGDARSS GFGLSTLFTI PSGFSPSGLL 120 NSPDFFPSPR QSSYGMPANQ QQPVQAFFPQ PQPLPQSQSQ PQPQTFALQR QPPSTAYSRS 180 YNVVSVDKPA DDGYNWRKYG QKPIKGCEFP RSYYKCTHAS CPVKKKVERS SDGQITQIIY 240 KGQHNHERPL NRRGGGGGRD SGDFRVFGNG SVQMMESSDD SGYGRSKDHD DDDDDDEEEE 300 ENDDDGEDIH ASKIRKIGGN SGVSMSHRTV TEPKIIVQTR SEVDLLDDGY RWRKYGQKVV 360 KGNPHPRSYY KCTTAGCTVR KHVERASTDP KAVITTYEGK HNHDVPTARN AATGTDHRRI 420 ALPALDPFIR PGPRPAPTPG DSPLLTSRLI LMGCLNSKLS SPGPRHLRRK SSTSAAPAIA 480 PPPPHRQIAG GSNQEFSRPP VGTSGLSLRS GLSRANVEVD PAAGWPTWLT SAAPEAVHGW 540 FPLCAEGFEK LEKIGQGTYS SVFRAREVGT GRTVALKKIR VHNFETENIR FIAREISILR 600 RLDHPNIMKL EGIIASRNSN SMYFVFEYME HDLEGLCSSP DIKFTEAQIK CYMKQLLWGV 660 EHCHLRGIMH RDIKASNILV NNKGILKLAD FGLANIVTSR NKNHLTSRVV TLWYRAPELL 720 MGSTSYGVSV DLWSVGCVFA EILTGGPVLK GRTEIEQLHK IYKLCGSPPE DFWEKTRLHP 780 QTKMFKPQHS YGGCLRERFE EFPTTAVNLL ETLLSIDPEK RRTSSSALMS EYFTTKPYPC 840 DPSTLPKYPP NKEMDAKHRE ELQRRRRVSI KKRDNLSSKK PRNPHKPLRY PPNFSKMPTQ 900 QENAEREKQL FIQTPSEISQ ATATMDRTDL RHTGLSHTTA PPASGSAWTK NRKENDGVST 960 LTYNQPSSDS HVSGTSMVFA KNTFGLSVLN QDKKSFPRPH VSSDVWFSGV LHKKAQEGLG 1020 QEEW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5efq_A | 5e-78 | 540 | 878 | 5 | 347 | Cyclin-dependent kinase 13 |
5efq_C | 5e-78 | 540 | 878 | 5 | 347 | Cyclin-dependent kinase 13 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551835.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551835.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: cyclin-dependent kinase 12 | ||||
TrEMBL | V5RF87 | 0.0 | V5RF87_BRACM; WRKY transcription factor 58 | ||||
STRING | XP_010551835.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13105 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01080.1 | 1e-97 | WRKY DNA-binding protein 58 |