PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551818.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 33755.2 Da PI: 9.6542 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.2 | 6.1e-16 | 99 | 144 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr ++eE +l ++++k+lG++ W++Ia +++ gRt++++k++w+++l XP_010551818.1 99 RGRLSPEEVDLVIRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 144 8999******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.135 | 69 | 93 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.59E-19 | 79 | 152 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 79 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 26.118 | 94 | 148 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 98 | 146 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-14 | 99 | 144 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-11 | 103 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 107 | 144 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSCSLNKPAH GSRTSSEFFG LSANQFNKET SINAYTNTHT HTYIIKRSYY GLFLTKSKET 60 NRLTDRDIVF SRLCFVGLNR CRKSCRLRWL NYLKPSIKRG RLSPEEVDLV IRLHKLLGNR 120 WSLIAGRLPG RTANDVKNYW NTHLSKKQDQ PSHSKTAPAC KKKINVGFPT EPVQKIDVIK 180 PRPRSFSDST QRRLLNPPPE IPFRGSKNKD SDNNDGNNDD IFHGKKTITG CICKDEYEIT 240 STVVKEGREV MWWENLLEEG EGTAAEEDEK IAAESSWMNN SPATFDVDLW NLLNT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-16 | 80 | 149 | 40 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551818.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551818.1 | 0.0 | PREDICTED: transcription factor MYB90-like isoform X1 | ||||
Swissprot | Q9FNV9 | 1e-51 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | E5D8F5 | 1e-53 | E5D8F5_BRAOB; MYB2 | ||||
STRING | XP_010551818.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-53 | myb domain protein 113 |
Publications ? help Back to Top | |||
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