PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551797.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 553aa    MW: 60603.4 Da    PI: 5.0996
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.32e-1291875451374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAeav+++d++la+al++++  la+++  +m+++a+yf+e+La+r++r        + p++ s+   s + + +  f+e +P+lkf+h
  XP_010551797.1 187 LVHALVACAEAVQQNDMKLADALVKHVGLLAASQIGAMRKVATYFAEGLARRIYR--------IYPRDGSP---SFSDTLYFHFYESCPYLKFAH 270
                     689****************************************************........44555553...333334556************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +taNqaIle ++ +e+vH+iDf +++GlQWpaL+qa+a Rp+g+p +R+Tg+g++ ++  +++   e+g++L+++A++lgv+fef+ ++++ l++
  XP_010551797.1 271 FTANQAILERFAAAEKVHVIDFALNMGLQWPALIQAIALRPGGSPAFRLTGIGPSVNSpeNADPFPEIGWKLSHLARTLGVEFEFKSIAVNCLSE 365
                     ******************************************************88878899********************************* PP

            GRAS 189 leleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     le+ +L+++p  E++aVnlv++lhr+l++++s+e+    v +++ks++P++++vveqea+hn++ Fl+rf+e+l+yys+lfdsle       +++
  XP_010551797.1 366 LEPAMLETRPgSESVAVNLVFELHRVLARPGSIEK----VFSTIKSIKPDIITVVEQEANHNGAVFLDRFTESLHYYSSLFDSLEGP----PSQD 452
                     **********99***********************....*********************************************999....4555 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++ +lgr+i n+vaceg +r+erhetl++Wr r+++aGFkpv+l+++a+kqa++ll  ++  dgy+vee++g+l+lgW++rpL+++SaW+
  XP_010551797.1 453 RVMSELFLGRQILNLVACEGPDRVERHETLAQWRTRFNSAGFKPVHLGSNAYKQASMLLDLFSgADGYNVEENDGCLLLGWQTRPLIATSAWQ 545
                     6666677*************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.1E-3346113IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011294.0E-3746119No hitNo description
PROSITE profilePS5098564.856161524IPR005202Transcription factor GRAS
PfamPF035146.9E-127187545IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0042538Biological Processhyperosmotic salinity response
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKRKDNQQDT SSGGGGEAAD GGSSLMAAVN KGKLLRSEDK ETTGVDELLV VLGYKVRSSA  60
MADVAEKLEQ LEMVLGSVQN DGLSYLSNDT VHYNPSDLSG WVDSMLSDLD PTRNQCRVYE  120
DHSEYDLRAI PGSAAYPKSH LEDDDTPRKR VKPGSGIGSN SGSDLAVETE STRSVVLLDS  180
QETGVRLVHA LVACAEAVQQ NDMKLADALV KHVGLLAASQ IGAMRKVATY FAEGLARRIY  240
RIYPRDGSPS FSDTLYFHFY ESCPYLKFAH FTANQAILER FAAAEKVHVI DFALNMGLQW  300
PALIQAIALR PGGSPAFRLT GIGPSVNSPE NADPFPEIGW KLSHLARTLG VEFEFKSIAV  360
NCLSELEPAM LETRPGSESV AVNLVFELHR VLARPGSIEK VFSTIKSIKP DIITVVEQEA  420
NHNGAVFLDR FTESLHYYSS LFDSLEGPPS QDRVMSELFL GRQILNLVAC EGPDRVERHE  480
TLAQWRTRFN SAGFKPVHLG SNAYKQASML LDLFSGADGY NVEENDGCLL LGWQTRPLIA  540
TSAWQLAAAE LRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-6118254413377Protein SCARECROW
5b3h_D5e-6118254413377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Has overlapping but distinct roles in GA signaling compared to RGA and GAI. Regulates the floral development. May also participate in seed germination and in ovule and anther development. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269|PubMed:11826301, ECO:0000269|PubMed:11877383, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596, ECO:0000269|PubMed:14973286, ECO:0000269|PubMed:15128937, ECO:0000269|PubMed:16034591}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551797.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated upon GA treatment.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551797.10.0PREDICTED: DELLA protein RGL1-like
SwissprotQ9C8Y30.0RGL1_ARATH; DELLA protein RGL1
TrEMBLA0A087HFZ90.0A0A087HFZ9_ARAAL; Uncharacterized protein
STRINGXP_010551797.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.10.0RGA-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yan A, et al.
    AtEXP2 is involved in seed germination and abiotic stress response in Arabidopsis.
    PLoS ONE, 2014. 9(1): p. e85208
    [PMID:24404203]
  3. Gallego-Giraldo C, et al.
    Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis.
    Plant J., 2014. 79(6): p. 1020-1032
    [PMID:24961590]
  4. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  5. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  6. Li W,Wang H,Yu D
    Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions.
    Mol Plant, 2016. 9(11): p. 1492-1503
    [PMID:27592586]
  7. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]
  8. Chen L,Xiang S,Chen Y,Li D,Yu D
    Arabidopsis WRKY45 Interacts with the DELLA Protein RGL1 to Positively Regulate Age-Triggered Leaf Senescence.
    Mol Plant, 2017. 10(9): p. 1174-1189
    [PMID:28735023]
  9. Zhang L,Chen L,Yu D
    Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering.
    Plant Physiol., 2018. 176(1): p. 790-803
    [PMID:29133369]