PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551740.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

FAR1

Protein Properties

Length: 848aa MW: 97466.9 Da PI: 7.1357

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.1	9.7e-26	89	191	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerr.......traetrtgCkaklkvkkekdgkwevt 79 +fY+eYA+ +GF++ +++s++sk+++e+++++f Cs++g+++e +k+ + + +ra +t+Cka+++vk++ dgkw ++ XP_010551740.1 89 SFYQEYARATGFNTAIQNSRRSKTTREFIDAKFACSRYGTKREYDKSfnkprarqnK----QdpenmggRRACGKTDCKASMHVKRRPDGKWIIH 179 5*****************************************9999999876541....134455669999****************** PP FAR1 80 kleleHnHelap 91 +++ eHnHel p XP_010551740.1 180 SFVREHNHELLP 191 *******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-23	89	191	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.5E-28	289	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.273	569	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.7E-4	579	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-7	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 848 aa Download sequence Send to blast
MDMNLRLPSG DQSKEDGEER GIDDVLEDEH KLHNGDIEIG KIEHVTVEVQ ADDSAGMSVP 60 MAELAECREG MNLEPLNGME FESHGEAYSF YQEYARATGF NTAIQNSRRS KTTREFIDAK 120 FACSRYGTKR EYDKSFNKPR ARQNKQDPEN MGGRRACGKT DCKASMHVKR RPDGKWIIHS 180 FVREHNHELL PAQAVSEQTR RIYAAMARQF AEYKTVISLK NNTKSSFEKG RNLAVETEDI 240 KILLDLLTRM QSMNSNFFYA VDLGDDQRLK NVFWVDAKSR HDYGSFCDVV SLDTTYLKNK 300 YRMPLAIFVG VNQHYQYMLL GCAVISDESE ATFSWIMQTW LKAMGGQAPK VIITEQDSVM 360 NSVVPEIFPN SHHCIFLWHV LVKVSENLGH VIKQHDNFTP KFEKCIYKSW RDEDFSRRWW 420 KILDRFGLKE DQWMQLLYED RRKWVPAYMT DVLLAGMSTS QRADSINAFF DKYMHKKTSM 480 QEFVKLYDSI LQDRYEEEAK ADSDTWNKQP TMKSPSPFEK SVSELYTPAV FKRFQVEVLG 540 AIACSPREES RDGTCFNFRV QDFEKNQDFV VTWNQTKSEV SCLCRLFEYK GYLCRHALNV 600 LQCCHLSSIP SQYILKRWTK DAKTRHFAGQ PEHLQLQTRL QRYNHLCRGA LKLSEEASSS 660 QESYNIAFRA IEEALETCAG VNTTSKSPQD MVMSPTQGLI SVEEDNQSRN TGKSSKKKNP 720 TKKRKVNSEQ EVIPVGAPES MQQMDKLSPR TVGIENYYGA QPSMHGMVQL NLMAPTRENF 780 YGNQQTIQGL GQLNSIAPNH GSYYGAQQGI PEMGGLDFFG RPNAFTYDIR DDPSVRTAQL 840 HEDASRHP

Sequence ? help Back to Top

Protein Sequence Length: 848 aa Download sequence Send to blast

MDMNLRLPSG DQSKEDGEER GIDDVLEDEH KLHNGDIEIG KIEHVTVEVQ ADDSAGMSVP  60
MAELAECREG MNLEPLNGME FESHGEAYSF YQEYARATGF NTAIQNSRRS KTTREFIDAK  120
FACSRYGTKR EYDKSFNKPR ARQNKQDPEN MGGRRACGKT DCKASMHVKR RPDGKWIIHS  180
FVREHNHELL PAQAVSEQTR RIYAAMARQF AEYKTVISLK NNTKSSFEKG RNLAVETEDI  240
KILLDLLTRM QSMNSNFFYA VDLGDDQRLK NVFWVDAKSR HDYGSFCDVV SLDTTYLKNK  300
YRMPLAIFVG VNQHYQYMLL GCAVISDESE ATFSWIMQTW LKAMGGQAPK VIITEQDSVM  360
NSVVPEIFPN SHHCIFLWHV LVKVSENLGH VIKQHDNFTP KFEKCIYKSW RDEDFSRRWW  420
KILDRFGLKE DQWMQLLYED RRKWVPAYMT DVLLAGMSTS QRADSINAFF DKYMHKKTSM  480
QEFVKLYDSI LQDRYEEEAK ADSDTWNKQP TMKSPSPFEK SVSELYTPAV FKRFQVEVLG  540
AIACSPREES RDGTCFNFRV QDFEKNQDFV VTWNQTKSEV SCLCRLFEYK GYLCRHALNV  600
LQCCHLSSIP SQYILKRWTK DAKTRHFAGQ PEHLQLQTRL QRYNHLCRGA LKLSEEASSS  660
QESYNIAFRA IEEALETCAG VNTTSKSPQD MVMSPTQGLI SVEEDNQSRN TGKSSKKKNP  720
TKKRKVNSEQ EVIPVGAPES MQQMDKLSPR TVGIENYYGA QPSMHGMVQL NLMAPTRENF  780
YGNQQTIQGL GQLNSIAPNH GSYYGAQQGI PEMGGLDFFG RPNAFTYDIR DDPSVRTAQL  840
HEDASRHP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:17012604, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:18715961, ECO:0000269\|PubMed:22634759}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551740.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551740.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_019059076.1	0.0	PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like
Swissprot	Q9LIE5	0.0	FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBL	A0A1J3CXP8	0.0	A0A1J3CXP8_NOCCA; Protein FAR-RED ELONGATED HYPOCOTYL 3
STRING	XP_010551740.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	0.0	far-red elongated hypocotyls 3

Publications ? help Back to Top
Chang N,Gao Y,Zhao L,Liu X,Gao H Arabidopsis FHY3/CPD45 regulates far-red light signaling and chloroplast division in parallel. Sci Rep, 2015. 5: p. 9612 [PMID:25872642] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Li D, et al. FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9375-80 [PMID:27469166] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]