PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010551540.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 415aa    MW: 47277.2 Da    PI: 8.0148
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010551540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-52161431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     + pGfrFhPtdeelv++yL++kv++++l++ e i+++diyk++PwdLpk + a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
  XP_010551540.1  16 MLPGFRFHPTDEELVSFYLRRKVQQRPLSV-ELIRQLDIYKYDPWDLPKFAMAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 109
                     579***************************.89***************7777889***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfy+gra kg ktdW+mhe+rl
  XP_010551540.1 110 dGSRCIGLKKSLVFYRGRAAKGAKTDWMMHEFRL 143
                     66777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-5914176IPR003441NAC domain
PROSITE profilePS5100557.51416176IPR003441NAC domain
PfamPF023651.3E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MGDKNKGEGE KMEEMMLPGF RFHPTDEELV SFYLRRKVQQ RPLSVELIRQ LDIYKYDPWD  60
LPKFAMAGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSD GSRCIGLKKS  120
LVFYRGRAAK GAKTDWMMHE FRLPSLSDNA SPPPKRLFEN ALSPNDSWAI CRIFKKTNPT  180
ALKRALSHSF VSSLPPETTF QTPNSTRSCS DKILKTSAYV HFHQIPYSDD KNATDCSRTP  240
LTATISNPLS YLGFTSYDRP GNVISSVPFP DPNLLLASQE TQSQFQKLTS NDISSLLLNV  300
SPDSSVLGEF TDRMDRDIGF GSAVAAQEQC PALVSFPHEH HENGFEENVR TKRNMRGNHE  360
EQQFETFRYM GGGFEMDDHH QDLKRNMLLE GSYPSLSAIN GEFPPCFSTI TRCFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-541817619165NO APICAL MERISTEM PROTEIN
1ut4_B2e-541817619165NO APICAL MERISTEM PROTEIN
1ut7_A2e-541817619165NO APICAL MERISTEM PROTEIN
1ut7_B2e-541817619165NO APICAL MERISTEM PROTEIN
3swm_A3e-541817622168NAC domain-containing protein 19
3swm_B3e-541817622168NAC domain-containing protein 19
3swm_C3e-541817622168NAC domain-containing protein 19
3swm_D3e-541817622168NAC domain-containing protein 19
3swp_A3e-541817622168NAC domain-containing protein 19
3swp_B3e-541817622168NAC domain-containing protein 19
3swp_C3e-541817622168NAC domain-containing protein 19
3swp_D3e-541817622168NAC domain-containing protein 19
4dul_A2e-541817619165NAC domain-containing protein 19
4dul_B2e-541817619165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010551540.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010551540.10.0PREDICTED: protein FEZ
SwissprotQ9ZVH01e-165FEZ_ARATH; Protein FEZ
TrEMBLA0A178WJ551e-162A0A178WJ55_ARATH; FEZ
STRINGXP_010551540.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-160NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]