PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010551522.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33422.3 Da PI: 5.0908

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010551522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	95	148	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ eLAk l+L+ rqV +WFqNrRa++k XP_010551522.1 95 KKRRLSVEQVKTLEKSFELGNKLEPERKLELAKTLHLQPRQVAIWFQNRRARWK 148 456899***********************************************9 PP
2	HD-ZIP_I/II	124.7	4.2e-40	94	186	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE+sFe +kLeperK ela++L+lqprqva+WFqnrRAR+ktkqlEkdye+Lkr+ ++lk+ene L+++++e++++l++ XP_010551522.1 94 EKKRRLSVEQVKTLEKSFELGNKLEPERKLELAKTLHLQPRQVAIWFQNRRARWKTKQLEKDYEVLKRQAENLKAENEILRAQNQEMHSQLAA 186 69**************************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-19	73	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-19	86	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.103	90	150	IPR001356	Homeobox domain
SMART	SM00389	1.1E-18	93	154	IPR001356	Homeobox domain
CDD	cd00086	2.63E-16	95	151	No hit	No description
Pfam	PF00046	1.7E-15	95	148	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	125	148	IPR017970	Homeobox, conserved site
CDD	cd14686	0.0084	143	185	No hit	No description
Pfam	PF02183	9.2E-12	150	190	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MSCNNAMAFF PASFMFQNPH ESDHQPQPPP PLAPLLPSCS LPQDFHGIAS FLGKRSQMAA 60 YSGSTSNFGG CCDVEAENMN GEEELSDDGS QLGEKKRRLS VEQVKTLEKS FELGNKLEPE 120 RKLELAKTLH LQPRQVAIWF QNRRARWKTK QLEKDYEVLK RQAENLKAEN EILRAQNQEM 180 HSQLAALKSR EPTESINLNK ETEGSCSNRS DNSSNNIRLD ISAAPPEIDS PGAAPPPPAT 240 GRHFFPPSPA PAATATATME FFQGSSSGQS MVKDETSIGT MFCNMDDQSG YWPWIDQPQF 300 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	150	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010551522.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010551522.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-149	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A178WPS4	1e-146	A0A178WPS4_ARATH; ATHB13
STRING	XP_010551522.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-109	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]