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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551449.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 29101.4 Da PI: 8.2286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_010551449.1 106 FSCNYCQRKFFSSQALGGHQNAH 128 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.74E-6 | 103 | 133 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MKPIIDLEVE ASSENGHSDT SSRVASNLSV QGTFAVVGDD FRAICNSSSD PEISLNLSLS 60 FSNNGGANPE ESSSLVGLPL SSTSESSNNT TEQQQQQRPS GSKRVFSCNY CQRKFFSSQA 120 LGGHQNAHKR ERTLVKRAMR MGLGILNANG YSAISCLPLH GGSAATMSFR ALGIKAHSSS 180 HRDFARPKEL MTTTTAARFD QGYFRNCVPL FVEDGKAELI WPGSFRREES GNESSARRGG 240 GGEGKAVFLE VKQPVEMENS VLDLTLKLR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551449.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551449.1 | 0.0 | PREDICTED: zinc finger protein 4-like | ||||
Swissprot | Q39263 | 1e-65 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A3P6AU33 | 1e-81 | A0A3P6AU33_BRACM; Uncharacterized protein | ||||
STRING | XP_010551449.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6672 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 1e-62 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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