PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 27101.1 Da PI: 9.7887 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00017 | 59 | 81 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H+ H XP_010551197.1 59 YPCNFCKKEFSSSQALGGHQIAH 81 99**************9999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.27E-7 | 56 | 87 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 57 | 86 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.3E-7 | 58 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.531 | 59 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 61 | 81 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MENQVISISS SDSSSTKQVK RKAMEETQIL SRSDKKETRR SRWLEDIQKV GSSSRSRVYP 60 CNFCKKEFSS SQALGGHQIA HKQEREWERR RRQIGSEYPW MALLPAHLNR SPISSTASWT 120 NSLSYDNHLG SRFDTFFQNP SNLFSPTVRY NSGYGGMAMT RDLVPTDGFS RNFSPVGDFP 180 RNFFGPSENT VIGDGYSRNL MATVGETSFN DKNPVHREDV HLKNDSAKDW GQDLSLKI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551197.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551197.1 | 1e-179 | PREDICTED: zinc finger protein 7-like | ||||
STRING | XP_010551197.1 | 1e-178 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6363 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27880.1 | 7e-19 | C2H2 family protein |