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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010551161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 41151.1 Da PI: 8.6449 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 136.2 | 2.9e-42 | 122 | 288 | 2 | 136 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssaseceae 76 a k+drhski+T++g+RdRR+Rls+e+a++fF Lqd+LGfdk+skt+ WLl+qakp+ik+l+++ XP_010551161.1 122 ASKTDRHSKIYTAKGLRDRRMRLSLEVAREFFGLQDMLGFDKASKTVSWLLTQAKPEIKKLARSppqqfnnglsseesqtrrpdL---------- 206 789*************************************************************544444443332222222220.......... PP TCP 77 sssssasnsssg.................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 + ++++++ k+k+sq+++ +++ k+ r kar+ra+ert+ek ++k+++ XP_010551161.1 207 -----------DevasgwigqegsnmnkdmptnlcevasaatkemEEKSAKDKKKRSQSRNPILRKIPKDARVKARERAKERTKEKLMMKERS 288 ...........1233334444444456677777777777777775444444466666666667799999********************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.8E-42 | 123 | 284 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.838 | 124 | 182 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.138 | 264 | 281 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MANTNDLVFW PYNDHSSRIL PAFIPSPSFH GILSNPNPKP ISEAIPQFEF DPESLYAVFL 60 QPNNENDNRN PYHHYQTSLN LLPLNKTVED QSFDASETNV RMEDSKEISN HRVPTQASKK 120 RASKTDRHSK IYTAKGLRDR RMRLSLEVAR EFFGLQDMLG FDKASKTVSW LLTQAKPEIK 180 KLARSPPQQF NNGLSSEESQ TRRPDLDEVA SGWIGQEGSN MNKDMPTNLC EVASAATKEM 240 EEKSAKDKKK RSQSRNPILR KIPKDARVKA RERAKERTKE KLMMKERSAS EAVVHHMKTS 300 DVNDHLGTNS NWSSFETGED SVQGMEEPSP SNGFVACNNT GMSDVAQESM TIINKWSPFS 360 IFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010551161.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010551161.1 | 0.0 | PREDICTED: transcription factor TCP18-like isoform X1 | ||||
Refseq | XP_019058994.1 | 0.0 | PREDICTED: transcription factor TCP18-like isoform X1 | ||||
TrEMBL | R0G522 | 1e-67 | R0G522_9BRAS; Uncharacterized protein | ||||
TrEMBL | R0G5F6 | 1e-67 | R0G5F6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010551161.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7269 | 27 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 2e-53 | TCP family protein |