PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550925.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 345aa MW: 36815.8 Da PI: 9.4741

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.8	3.2e-15	166	220	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 kr rr+ +NRe+ArrsR+RK+a + eLe+ v e+ +eN+ L k+l ++++ + XP_010550925.1 166 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSEMRTENSNLLKRLTDITQTFNN 220 69*******************************************9999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-17	160	227	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.266	165	216	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-13	166	217	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.9E-13	167	217	No hit	No description
SuperFamily	SSF57959	9.64E-12	167	218	No hit	No description
PROSITE pattern	PS00036	0	170	185	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.4E-27	234	341	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDRVFSGEIW PAPTAKDTVD AVSGDTDGTA RLNRSASEWA FQRFIQESSS SSAAGAGDIT 60 AAYGSSDAGP PSPCLPVDSA EYRAYLKSKL NLACAAVAMK RETSGRASSG AQASSASEQA 120 SPASSKAAPK KPSVPGKSTT SGSELSGDEE ADGETETTGN TDPLNAKRVR RMLSNRESAR 180 RSRRRKQAHL TELETQVSEM RTENSNLLKR LTDITQTFNN AAVENRVLKA NVETLRAKVK 240 MAEERVKRIT GLNPMLQAIP DISTVSVPSF NGSLSETSSD DPGHRIFRHS PNNSLATSNT 300 DNTAIEISSA TSKALTACKM ERTASLHRVA SLEHLQKRIS SASQP

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDRVFSGEIW PAPTAKDTVD AVSGDTDGTA RLNRSASEWA FQRFIQESSS SSAAGAGDIT  60
AAYGSSDAGP PSPCLPVDSA EYRAYLKSKL NLACAAVAMK RETSGRASSG AQASSASEQA  120
SPASSKAAPK KPSVPGKSTT SGSELSGDEE ADGETETTGN TDPLNAKRVR RMLSNRESAR  180
RSRRRKQAHL TELETQVSEM RTENSNLLKR LTDITQTFNN AAVENRVLKA NVETLRAKVK  240
MAEERVKRIT GLNPMLQAIP DISTVSVPSF NGSLSETSSD DPGHRIFRHS PNNSLATSNT  300
DNTAIEISSA TSKALTACKM ERTASLHRVA SLEHLQKRIS SASQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	186	RRSRRRKQ
2	181	186	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550925.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550925.1	0.0	PREDICTED: basic leucine zipper 63 isoform X4
Swissprot	B9DGI8	1e-104	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	E4MXL8	1e-110	E4MXL8_EUTHA; mRNA, clone: RTFL01-34-D15
TrEMBL	V4KQP7	1e-110	V4KQP7_EUTSA; Uncharacterized protein
STRING	XP_010550922.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	2e-86	bZIP family protein

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]