PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010550924.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 352aa MW: 37575.6 Da PI: 9.6919

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010550924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.8	3.1e-15	173	227	4	58
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 kr rr+ +NRe+ArrsR+RK+a + eLe+ v e+ +eN+ L k+l ++++ + XP_010550924.1 173 AKRVRRMLSNRESARRSRRRKQAHLTELETQVSEMRTENSNLLKRLTDITQTFNN 227 69*******************************************9999988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.5E-17	167	234	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.266	172	223	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.4E-13	173	224	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-11	174	225	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.2E-13	174	224	No hit	No description
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.7E-27	241	348	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDRVFSGEIW PAPTAKDTVD AVSGDTDGTA RLNRSASEWA FQRFIQESSS SSAAGAGDIT 60 AAYGSSDAGP PSPCLPVDSA EYRAYLKSKL NLACAAVAMK RASFTKPQET SGRASSGAQA 120 SSASEQASPA SSKAAPKKPS VPGKSTTSGS ELSGDEEADG ETETTGNTDP LNAKRVRRML 180 SNRESARRSR RRKQAHLTEL ETQVSEMRTE NSNLLKRLTD ITQTFNNAAV ENRVLKANVE 240 TLRAKVKMAE ERVKRITGLN PMLQAIPDIS TVSVPSFNGS LSETSSDDPG HRIFRHSPNN 300 SLATSNTDNT AIEISSATSK ALTACKMERT ASLHRVASLE HLQKRISSAS QP

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDRVFSGEIW PAPTAKDTVD AVSGDTDGTA RLNRSASEWA FQRFIQESSS SSAAGAGDIT  60
AAYGSSDAGP PSPCLPVDSA EYRAYLKSKL NLACAAVAMK RASFTKPQET SGRASSGAQA  120
SSASEQASPA SSKAAPKKPS VPGKSTTSGS ELSGDEEADG ETETTGNTDP LNAKRVRRML  180
SNRESARRSR RRKQAHLTEL ETQVSEMRTE NSNLLKRLTD ITQTFNNAAV ENRVLKANVE  240
TLRAKVKMAE ERVKRITGLN PMLQAIPDIS TVSVPSFNGS LSETSSDDPG HRIFRHSPNN  300
SLATSNTDNT AIEISSATSK ALTACKMERT ASLHRVASLE HLQKRISSAS QP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	193	RRSRRRKQ
2	188	193	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in controlling responses to starvation (PubMed:26263501). BZIP2-BZIP63-KIN10 complex binds to the ETFQO promoter to up-regulate its transcription (PubMed:29348240). {ECO:0000269\|PubMed:26263501, ECO:0000269\|PubMed:29348240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010550924.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly repressed by glucose. {ECO:0000269\|PubMed:18841482}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010550924.1	0.0	PREDICTED: basic leucine zipper 63 isoform X3
Swissprot	B9DGI8	1e-111	BZP63_ARATH; Basic leucine zipper 63
TrEMBL	E4MXL8	1e-117	E4MXL8_EUTHA; mRNA, clone: RTFL01-34-D15
TrEMBL	V4KQP7	1e-117	V4KQP7_EUTSA; Uncharacterized protein
STRING	XP_010550922.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	3e-90	bZIP family protein

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mair A, et al. SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants. Elife, 2016. [PMID:26263501] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]