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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550796.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 309aa MW: 34606.3 Da PI: 6.7416 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.8 | 1.3e-36 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+++C+lapyfp+eqpk f nvh+lFG+s ++k+l++lp+++r++am+s+++++ +r r Pv+G++g+ l+lq + +++el XP_010550796.1 11 ACAACKYQRRRCSSECPLAPYFPSEQPKLFHNVHRLFGVSSLVKILQRLPPSQRPEAMKSIIFQSLVRDRSPVHGCLGLTLQLQYLIWLSQQELR 105 7*********************************************************************************************9 PP DUF260 96 llkee 100 l++++ XP_010550796.1 106 LVNAR 110 98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.397 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-35 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MTVKGGGTNG ACAACKYQRR RCSSECPLAP YFPSEQPKLF HNVHRLFGVS SLVKILQRLP 60 PSQRPEAMKS IIFQSLVRDR SPVHGCLGLT LQLQYLIWLS QQELRLVNAR LHLFRQQQQQ 120 PRDAHPDNDH HHPSEDNHVS SQQQLDLGMV IPVKNSHACS SSSSSSYSSS ASPPLPFFSP 180 LPPPQQQQQV SYFNSCSDVN GYSSAENIPN TYNPYGGFCH YNGDDQRNNV TTIQSQHLNP 240 EIVSQDYDEI HQFFDIIDDR QSFVEETKEA YASSSSEGSL KGTTTQPLEH VGENELRSAA 300 TRFSLTSVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-24 | 7 | 111 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-24 | 7 | 111 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550796.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550796.1 | 0.0 | PREDICTED: LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 6e-78 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | R0HMD7 | 1e-96 | R0HMD7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010550796.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 8e-71 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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