 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_010550738.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
| Family |
NF-YC |
| Protein Properties |
Length: 239aa MW: 25968.2 Da PI: 5.0219 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_010550738.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 179.3 | 3.6e-56 | 53 | 157 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92
ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl
XP_010550738.1 53 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 147
89*****998899********************************************************************************** PP
NF-YC 93 vdivprdelk 102
vdivprde+k
XP_010550738.1 148 VDIVPRDEIK 157
*******975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0010468 | Biological Process | regulation of gene expression |
| GO:0048586 | Biological Process | regulation of long-day photoperiodism, flowering |
| GO:0051247 | Biological Process | positive regulation of protein metabolic process |
| GO:2000905 | Biological Process | negative regulation of starch metabolic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005829 | Cellular Component | cytosol |
| GO:0046982 | Molecular Function | protein heterodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 239 aa
Download sequence Send
to blast |
MDQNNNQQPH SSAYPPPPPP SAAAAASGGI VPSAAAAAGG TPYHHLLQQQ QQQLQMFWSY 60
QRQEIEQVND FKNHQLPLAR IKKIMKADED VRMISAEAPI LFAKACELFI LELTIRSWLH 120
AEENKRRTLQ KNDIAAAITR TDIFDFLVDI VPRDEIKDEA ALGGMVTPTA SGVPYYYPPM 180
GQPTVGPGGM MIGRPAVDPT GVYVQPPSQA WQSVWQNSAD EVSYGSGGTS GQGNLEGQG
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
| Publications
? help Back to Top |
- Hwang YH, et al.
Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time.
Plant Cell Rep., 2016. 35(4): p. 857-65
[PMID:26754793] - Liu X, et al.
The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis.
Nat Commun, 2016. 7: p. 12768
[PMID:27624486] - Myers ZA, et al.
NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana.
PLoS Genet., 2016. 12(9): p. e1006333
[PMID:27685091] - Tang Y, et al.
Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation.
Mol Plant, 2017. 10(2): p. 260-273
[PMID:27876642] - Zhao H, et al.
The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
Front Plant Sci, 2016. 7: p. 2045
[PMID:28119722] - Qi M, et al.
QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests.
Plant Biotechnol. J., 2019. 17(1): p. 252-263
[PMID:29878511]
|
