PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550715.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 269aa    MW: 31098.6 Da    PI: 9.4577
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550715.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.9e-05103126123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     +kC++C+ksF+   +L +H  + H
  XP_010550715.1 103 WKCGYCKKSFRAENYLDQHFDNrH 126
                     58*****************76666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.871103126IPR007087Zinc finger, C2H2
PROSITE patternPS000280105126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGSLKGAFSA IFLLLSLLLH QSLSEEFGRS ASTRSVKQDQ DHVHEVHCSR ERSRTAWQIV  60
EDYLMPFVER ERYQLPRSCR LHPDNDLYRD QEQHKVHVDV NEWKCGYCKK SFRAENYLDQ  120
HFDNRHYNLL NTTQSKCLAD ICGALHCDFV LSSKKSKSKC NPAAVAKNRH LCESLANSCF  180
PVNQGPSSSR LHEHFLRQFC DAHTCTGRNK PFPRGGKKQS GVFYLAISIL TIMLLPVFYL  240
LVFLHQREMR SGTQELRRIK KLGQKTKPS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550715.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550715.10.0PREDICTED: uncharacterized protein LOC104821504
TrEMBLA0A2C9UJ371e-148A0A2C9UJ37_MANES; Uncharacterized protein
STRINGXP_010550715.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43711618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63280.11e-141C2H2-like zinc finger protein