PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550529.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family WRKY
Protein Properties Length: 353aa    MW: 39141 Da    PI: 6.7605
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.6e-29141202159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++d+ ++++tY+g+H+++
  XP_010550529.1 141 LDDGFSWRKYGQKDILGAKFPRGYYRCTHRhsqGCLATKQVQRSDDDTMLFDVTYRGTHTCS 202
                     59***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.504136199IPR003657WRKY domain
SuperFamilySSF1182901.44E-25139203IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-27139203IPR003657WRKY domain
SMARTSM007741.6E-42141203IPR003657WRKY domain
PfamPF031068.3E-27142201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009751Biological Processresponse to salicylic acid
GO:0010193Biological Processresponse to ozone
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MLLLTHVLKL LSKESPRIFI PGIRNMENFG EWEKMKSMIN ELMAEGRDYA NQLQSQLNSA  60
SSSQETREEL AKKILESYQK SLTLMNSGES GGQNSPHCHG GSSPKSEDSD QDHQVIRSKK  120
AMPRWKHKVR ITPGAGIDTT LDDGFSWRKY GQKDILGAKF PRGYYRCTHR HSQGCLATKQ  180
VQRSDDDTML FDVTYRGTHT CSQAANNVGS SSTFPIDPSV QDQEPNPTSQ ELDNLRGNLR  240
VVTEGLEIDH HGNQQHRQLL HFPSSTNPNP AGDSNAYHFV HATDNSGLYG NGYSNHGGDY  300
NFSMPHGGMN EFHDIISASP STSNSPTAGF DSPYGNAAFD PNFSFGRFGG FFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-191411991474Disease resistance protein RRS1
5w3x_D1e-191411991474Disease resistance protein RRS1
6ir8_A9e-20141201868OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SUP6}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550529.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:22268143}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550529.10.0PREDICTED: probable WRKY transcription factor 30
SwissprotQ9FL622e-94WRK30_ARATH; Probable WRKY transcription factor 30
TrEMBLV4K2091e-106V4K209_EUTSA; Uncharacterized protein
STRINGXP_010550529.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125951928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.12e-86WRKY DNA-binding protein 30
Publications ? help Back to Top
  1. Jiang W,Wu J,Zhang Y,Yin L,Lu J
    Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses.
    Protoplasma, 2015. 252(5): p. 1361-74
    [PMID:25643917]
  2. Kanofsky K,Bahlmann AK,Hehl R,Dong DX
    Combinatorial requirement of W- and WT-boxes in microbe-associated molecular pattern-responsive synthetic promoters.
    Plant Cell Rep., 2017. 36(6): p. 971-986
    [PMID:28341984]