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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010550510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 192aa MW: 21721.5 Da PI: 10.2177 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.2 | 3.8e-13 | 126 | 170 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+e+++ + +++G+g+W++I+r ++t+ q+ s+ qky XP_010550510.1 126 PWTKEEHEQFLIGLEKYGKGDWRSISRQCVMTKTPIQIASHAQKY 170 8**************************99989************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-11 | 116 | 175 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.81 | 119 | 175 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.89E-17 | 120 | 176 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.3E-16 | 122 | 173 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.5E-8 | 123 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.43E-8 | 126 | 171 | No hit | No description |
Pfam | PF00249 | 1.0E-10 | 126 | 170 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSESRGAVLA MINARYLRGN DIPEWSWNEN KTFENAIAAA AAAVDADNSF SDIVGEISSR 60 FSGKTKQQIQ MHLDALIEDI RTIEHGLIPL PDYGDSGSTI RQNSGDRWRT TAAAIKHKHH 120 RKKAVPWTKE EHEQFLIGLE KYGKGDWRSI SRQCVMTKTP IQIASHAQKY FLRLKRNSAT 180 RTSQIRSNSN LN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010550510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550510.1 | 1e-142 | PREDICTED: transcription factor DIVARICATA-like | ||||
TrEMBL | A0A2K1ZQ83 | 4e-45 | A0A2K1ZQ83_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010550510.1 | 1e-142 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20625 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 3e-31 | MYB family protein |