PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010550283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 751aa MW: 83826.3 Da PI: 9.1809 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.4 | 3.8e-06 | 236 | 255 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G+C+ G +C+F+H XP_010550283.1 236 PCKFFAA-GHCRNGKNCRFSH 255 7**9999.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.793 | 231 | 258 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.1E-6 | 233 | 256 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 751 aa Download sequence Send to blast |
MSGSNRKRSS RWDFKEEPEH LNSNARGDDY PGKSGSYFRD KESEPGLSYT EGNGRNDSKR 60 LDDGEHLKAK HENRQHSGEA WPRSRVSHSG DGMIGYYDRQ SPVRDRHNDS RSRSRSRSRS 120 PVHRVKREAG PYDKQKSRAR VSPQASRDFD GRYKRGGDFQ SDQNADPGWE ARNKKARDSK 180 YYTDDSREQA IRGGRSDYST DYPEDDLRRE KRHLHEGTSD PVLRRHRNER EFSNIPCKFF 240 AAGHCRNGKN CRFSHHGAAR GSPDRKPKEN LFGQDNNHSG AEKFQNGPRW NGFEKADAGK 300 SGDVGTARAN TSISQPKVNE SWINDMEMSP DWDYGVKTFN KPSKDEHSEV KDGLWSHSSA 360 ILPQNVKAGN SYFQQDGNHR SSSAFSYGDK PVNNYKNTVN VAPIQTSDQD NFNHSALRNQ 420 NSLAVGGSQV ITSAINLPGG LNSSNPENGK GYQENLSVEK PVSGDLESSK GMFNNANSAT 480 HNNATPEELN HISNISASLA QFFGNGQPLP HHFSTLTPQT AMQVPLHTES EGYGKQQSSV 540 GIQPNQAAMF HSHNNPVINL IQQKGNEMNT GAGAVQAVTT PQTINTDAQQ HDSSVPSAFL 600 GIGSETEPVD TSHKQDENPK VTEEKKDKKT EESSKEEDGK KTYEESEDAE NAEEDDKADG 660 NKKGKDPKGI RAFKFALVET VKEILKPFWR EGRMSKDAYK NIVKKVVDKV TGTMQNGNVP 720 QTQEKIEHYL SASKPKLTKL VQAYISKVKK S |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 110 | 118 | RSRSRSRSR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010550283.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550283.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 38 | ||||
TrEMBL | D7KD69 | 0.0 | D7KD69_ARALL; Predicted protein | ||||
STRING | XP_010550283.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9160 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33835.1 | 7e-18 | C3H family protein |