PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550226.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 197aa    MW: 21750 Da    PI: 8.5987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550226.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-055476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++C++ F ++  L  H++ H
  XP_010550226.1 54 FSCQYCPRKFYTSQALGGHQNAH 76
                    89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-65181No hitNo description
PROSITE profilePS5015711.1985481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MADPPSLHNF LPRHLSSGSK QRPTAANKRH STSSYALAGR MGVSPPSPSH HRIFSCQYCP  60
RKFYTSQALG GHQNAHKRER AAARRNLGIS TPSVPSDRRS GIYNANEDHK PSLVQPLTCF  120
YHNPQAFLGM GSNSAAMADH SGPWEELDQH SRVGEYYTES QPPMGGSSCP YGYGYGYTLS  180
HDDRMGEDES LDLSLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550226.11e-145PREDICTED: zinc finger protein KNUCKLES-like
STRINGXP_010550226.11e-145(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.19e-26C2H2 family protein