PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010550130.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family HD-ZIP
Protein Properties Length: 237aa    MW: 27126.9 Da    PI: 4.4196
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010550130.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.5e-2165118356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t+eq++ Le+ Fe ++++  e+++eLAkklgL+ rqV vWFqNrRa++k
  XP_010550130.1  65 KKRRLTPEQVNLLEKSFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWK 118
                     5678*************************************************9 PP
2HD-ZIP_I/II132.12.1e-4264156193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqv+lLE+sFe+e+kLeperK+ela++LglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+l ++ ++  ke+++L++e+++
  XP_010550130.1  64 EKKRRLTPEQVNLLEKSFEAENKLEPERKTELAKKLGLQPRQVAVWFQNRRARWKTKQLETDYDLLKSTYDNLLADYQSTVKENDKLKSEVAS 156
                     69**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-2053122IPR009057Homeodomain-like
PROSITE profilePS5007118.13960120IPR001356Homeobox domain
SMARTSM003893.1E-2063124IPR001356Homeobox domain
CDDcd000861.16E-1865121No hitNo description
PfamPF000463.5E-1865118IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-2266127IPR009057Homeodomain-like
PRINTSPR000311.1E-691100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000311.1E-6100116IPR000047Helix-turn-helix motif
PfamPF021831.9E-15120162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MESNKFFFDP SACHGNMLFL GNRNPVIQGG RSVISMEETS KRRPFFSSPE DLYDEEYYDE  60
QLPEKKRRLT PEQVNLLEKS FEAENKLEPE RKTELAKKLG LQPRQVAVWF QNRRARWKTK  120
QLETDYDLLK STYDNLLADY QSTVKENDKL KSEVASLTEK LQGREEAGKE PPGEGEGPDQ  180
KAQEARLSTG SGVVDYEDAP HSCDSYFPIH SEEDDISDDN LFVAADGEEA LAWWSCA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010550130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010550130.11e-177PREDICTED: homeobox-leucine zipper protein HAT5-like
RefseqXP_010550131.11e-177PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022836e-98HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLE4MWF71e-106E4MWF7_EUTHA; mRNA, clone: RTFL01-08-H09
STRINGXP_010550130.11e-176(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88842738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-86homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]