![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010550055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 282aa MW: 30105.5 Da PI: 8.4035 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 105.7 | 2.9e-33 | 57 | 111 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 v+Y+eClkNhAa +Ggha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr+ XP_010550055.1 57 VTYRECLKNHAAGIGGHALDGCGEFMPSSSTDpNDPTSLTCAACGCHRNFHRRDD 111 79**************************999999*******************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 8.0E-17 | 53 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.0E-28 | 57 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.0E-31 | 58 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.541 | 59 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 5.73E-15 | 168 | 241 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 170 | 241 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.8E-24 | 182 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 282 aa Download sequence Send to blast |
MEIAPMVTAT TTTTNTVTIP DPDSPDHEIG APTRFQPAKP ISFSNGKRHH HPALGPVTYR 60 ECLKNHAAGI GGHALDGCGE FMPSSSTDPN DPTSLTCAAC GCHRNFHRRD DPSSSPAAAV 120 EFRPQNRHHP MPPLPLPPPV RSPDDDSASP PPISSSYMLL SLSGGRNSSG GGATAVAPGT 180 HKRFRTKFSQ YQKERMLEFA ERLGWRMPKA AEDAGVREFC RQIGVEKGVF KVWMHNNKNN 240 GRGGARRGFT LSGGGVVAGD SREKVAESDH DGGTAAEGSF SS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 9e-21 | 180 | 241 | 16 | 76 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 163 | 171 | GGRNSSGGG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010550055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010550055.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q9LXG0 | 1e-100 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 | ||||
TrEMBL | E4MXS6 | 2e-99 | E4MXS6_EUTHA; mRNA, clone: RTFL01-24-M06 | ||||
TrEMBL | V4N7A5 | 2e-99 | V4N7A5_EUTSA; Uncharacterized protein | ||||
STRING | XP_010550055.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15210.1 | 4e-71 | homeobox protein 30 |
Publications ? help Back to Top | |||
---|---|---|---|
|