PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549641.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 370aa    MW: 40748.4 Da    PI: 9.4239
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-1963113155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f+t +eAa a+++a+kkl+g
  XP_010549641.1  63 CRYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFDTSFEAAMAYDKAAKKLYG 113
                     78*****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.55E-2763119No hitNo description
PfamPF008472.3E-1463113IPR001471AP2/ERF domain
PROSITE profilePS5103221.25964121IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2064120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-2964120IPR001471AP2/ERF domain
SMARTSM003801.4E-3264127IPR001471AP2/ERF domain
PRINTSPR003671.0E-96576IPR001471AP2/ERF domain
PRINTSPR003671.0E-987103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MQSVPQPKNV HTHRKGPNRA TELNKQRRRT IKRTQAVCNK KPDMGRSRKG CMRGKGGPDN  60
ATCRYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFDTSFEA AMAYDKAAKK LYGQAAKLNL  120
VQPDQLQGKN GCFSRHGSDG SWAYKTNPVR VQNWASGSIG SWSERMDFPH EHGHRPQGGT  180
NGCFLGQEYD FGFVSSCGSN LPWLFSKPNS FNQEKVHGYT PCGGGLDLSN SAKLSLQQGL  240
QDHQDLKYTC PTGSWSRFLI AQEKASREMG HDDVSRTSSL QGPSDNKDGM LVPSFVSQEV  300
DGFLVPNGGG GGGGGSCGGG GGRGKVPEVT GFLAMDNDLL DMDDFGTLVG KNGDFKNWCH  360
DEWQHPWSWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1565120359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A4e-15641201471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00519DAPTransfer from AT5G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549641.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549641.10.0PREDICTED: dehydration-responsive element-binding protein 2G
SwissprotP618277e-84DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLD7LXV32e-82D7LXV3_ARALL; Uncharacterized protein
STRINGXP_010549641.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.14e-77ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]