PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010549345.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C3H

Protein Properties

Length: 793aa MW: 88103.3 Da PI: 4.3595

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.3	1.2e-07	366	385	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C ffa+ G+C +G +C+F H+ XP_010549345.1 366 CEFFAK-GWCIRGKSCRFLHV 385 ****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0093	360	386	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.72E-6	360	384	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.183	360	387	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.5E-5	365	385	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MERQGPVSDS AMDAEEIEFE EEEVEVEEEG NWEEDPEEEE EDPEEEEVIE EEEEDPQEEE 60 AIEEEDPQEE EEEEDPEEWE AIEEEEEEED PQEEEEEAIE EELVEEEEEE PANEDVDESS 120 TSPSRSSVFQ KDVERDSKFN RLDRHLASCT SRPEGFSSCP ESNSDDGVLK TAPPSDEQST 180 TVKDTCLSFE NSVKEPASAG EREAHESCVS DKDSERPTGN LQVNNLSLEN DDKPRVALVS 240 LRNTRTGNAA GEKTSDSVPS RSGTGQKSNG ACISGDRPSK IKAEDENIGT KPGNTGFVNP 300 AGENGSDSVP GSAGRSRNSN AACSSGKNRS NIKFEDDKCG KRSRLRSFSP GGEMKEPQRK 360 RAEIACEFFA KGWCIRGKSC RFLHVKDTLN NTSRQQGGNN LAGSSEARPC EERTTSDNRV 420 RGIACQSRVV SYNEHIGFIS SSKDMGRERL KQNVGADGLE NRSLVCNNGK PSNPRSSFIH 480 EHRYSASSGN SFHASPSGAQ RQFENKNKFY GLGTLLGFQG LSVSSRQDPE GETANKKAKI 540 SSNDWEPSEP FRPSFTIPSS ILPAYGTIYD LFLDGMDVQT VEDSFIDTFF SSKGEEEGKM 600 HHRGRDGDSV SGPRDEECND DVNGSSCSQN QYKEAVPEKK SELHFVEMVA TSVVEQNKTT 660 PENENYCKAV PKRSKATGGG YDSWQKSDMS SNIKISREDR EGRTGAGTKG MSHFRTALID 720 TIKEMLKPIW REGRLSKEAH NRTVKMAAEK VIRTAVQFHQ VPTDTESIEQ YLSVSQTKIV 780 KLVEGYVAKF RTH

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MERQGPVSDS AMDAEEIEFE EEEVEVEEEG NWEEDPEEEE EDPEEEEVIE EEEEDPQEEE  60
AIEEEDPQEE EEEEDPEEWE AIEEEEEEED PQEEEEEAIE EELVEEEEEE PANEDVDESS  120
TSPSRSSVFQ KDVERDSKFN RLDRHLASCT SRPEGFSSCP ESNSDDGVLK TAPPSDEQST  180
TVKDTCLSFE NSVKEPASAG EREAHESCVS DKDSERPTGN LQVNNLSLEN DDKPRVALVS  240
LRNTRTGNAA GEKTSDSVPS RSGTGQKSNG ACISGDRPSK IKAEDENIGT KPGNTGFVNP  300
AGENGSDSVP GSAGRSRNSN AACSSGKNRS NIKFEDDKCG KRSRLRSFSP GGEMKEPQRK  360
RAEIACEFFA KGWCIRGKSC RFLHVKDTLN NTSRQQGGNN LAGSSEARPC EERTTSDNRV  420
RGIACQSRVV SYNEHIGFIS SSKDMGRERL KQNVGADGLE NRSLVCNNGK PSNPRSSFIH  480
EHRYSASSGN SFHASPSGAQ RQFENKNKFY GLGTLLGFQG LSVSSRQDPE GETANKKAKI  540
SSNDWEPSEP FRPSFTIPSS ILPAYGTIYD LFLDGMDVQT VEDSFIDTFF SSKGEEEGKM  600
HHRGRDGDSV SGPRDEECND DVNGSSCSQN QYKEAVPEKK SELHFVEMVA TSVVEQNKTT  660
PENENYCKAV PKRSKATGGG YDSWQKSDMS SNIKISREDR EGRTGAGTKG MSHFRTALID  720
TIKEMLKPIW REGRLSKEAH NRTVKMAAEK VIRTAVQFHQ VPTDTESIEQ YLSVSQTKIV  780
KLVEGYVAKF RTH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the FRIGIDA-mediated vernalization pathway, but not in the autonomous flowering pathway. Acts cooperatively with FRI (FRIGIDA) or FRL1 (FRIGIDA-LIKE 1) to promote FLC (FLOWERING LOCUS C) expression. Required for the stabilization of the FRI-C complex. {ECO:0000269\|PubMed:16291783, ECO:0000269\|PubMed:21282526}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549345.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549345.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X2
Swissprot	Q84VG7	1e-118	FES1_ARATH; Protein FRIGIDA-ESSENTIAL 1
TrEMBL	A0A087G3H4	1e-124	A0A087G3H4_ARAAL; Uncharacterized protein
STRING	XP_010549343.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-120	C3H family protein

Publications ? help Back to Top
Ding L,Kim SY,Michaels SD FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Plant Physiol., 2013. 163(1): p. 243-52 [PMID:23899645]