PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010549344.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 801aa    MW: 88986.3 Da    PI: 4.3595
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010549344.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.21.2e-07366385626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C ffa+ G+C +G +C+F H+
  XP_010549344.1 366 CEFFAK-GWCIRGKSCRFLHV 385
                     ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0093360386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6360384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183360387IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MERQGPVSDS AMDAEEIEFE EEEVEVEEEG NWEEDPEEEE EDPEEEEVIE EEEEDPQEEE  60
AIEEEDPQEE EEEEDPEEWE AIEEEEEEED PQEEEEEAIE EELVEEEEEE PANEDVDESS  120
TSPSRSSVFQ KDVERDSKFN RLDRHLASCT SRPEGFSSCP ESNSDDGVLK TAPPSDEQST  180
TVKDTCLSFE NSVKEPASAG EREAHESCVS DKDSERPTGN LQVNNLSLEN DDKPRVALVS  240
LRNTRTGNAA GEKTSDSVPS RSGTGQKSNG ACISGDRPSK IKAEDENIGT KPGNTGFVNP  300
AGENGSDSVP GSAGRSRNSN AACSSGKNRS NIKFEDDKCG KRSRLRSFSP GGEMKEPQRK  360
RAEIACEFFA KGWCIRGKSC RFLHVKDTLN NTSRQQGGNN LAGSSEARPC EVCFPYVSSE  420
RTTSDNRVRG IACQSRVVSY NEHIGFISSS KDMGRERLKQ NVGADGLENR SLVCNNGKPS  480
NPRSSFIHEH RYSASSGNSF HASPSGAQRQ FENKNKFYGL GTLLGFQGLS VSSRQDPEGE  540
TANKKAKISS NDWEPSEPFR PSFTIPSSIL PAYGTIYDLF LDGMDVQTVE DSFIDTFFSS  600
KGEEEGKMHH RGRDGDSVSG PRDEECNDDV NGSSCSQNQY KEAVPEKKSE LHFVEMVATS  660
VVEQNKTTPE NENYCKAVPK RSKATGGGYD SWQKSDMSSN IKISREDREG RTGAGTKGMS  720
HFRTALIDTI KEMLKPIWRE GRLSKEAHNR TVKMAAEKVI RTAVQFHQVP TDTESIEQYL  780
SVSQTKIVKL VEGYVAKFRT H
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010549344.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010549343.10.0PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1
TrEMBLA0A087G3H41e-123A0A087G3H4_ARAAL; Uncharacterized protein
STRINGXP_010549343.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-120C3H family protein