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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010549187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24456 Da PI: 6.0604 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.8 | 1.6e-14 | 28 | 67 | 11 | 50 |
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R +++ KA ELSvLCd+ v+vi + s+g+l+ ++ XP_010549187.1 28 GAFERRVQTLKNKARELSVLCDTSVCVICYDSDGQLHHWP 67 57899999*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0013 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.05E-15 | 18 | 100 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.11E-16 | 29 | 94 | No hit | No description |
PROSITE profile | PS50066 | 10.919 | 30 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-11 | 30 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGRGGLGRTE VGKHRRRRAE RRSSRSGGAF ERRVQTLKNK ARELSVLCDT SVCVICYDSD 60 GQLHHWPERP EDVRRIAANY RGLSEEDRQK HAVDLNGFLS SEATKANRAS KKPRLAPAYP 120 DSDGTVDNLS DDELGVLLSR IDAKLVQFQE RQSLVMDHGG RTEKDFEGRN EDVGSEKSAT 180 GPRGEENTDE IDIFRGLEDL DCGFQGFGFE SFGGSSMYI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010549187.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010549187.1 | 1e-160 | PREDICTED: agamous-like MADS-box protein AGL103 | ||||
STRING | XP_010549187.1 | 1e-160 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 2e-21 | AGAMOUS-like 103 |