PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_010549187.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

M-type_MADS

Protein Properties

Length: 219aa MW: 24456 Da PI: 6.0604

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010549187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	44.8	1.6e-14	28	67	11	50
HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 f +R +++ KA ELSvLCd+ v+vi + s+g+l+ ++ XP_010549187.1 28 GAFERRVQTLKNKARELSVLCDTSVCVICYDSDGQLHHWP 67 57899999*******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0013	9	69	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.05E-15	18	100	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.11E-16	29	94	No hit	No description
PROSITE profile	PS50066	10.919	30	70	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-11	30	66	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGRGGLGRTE VGKHRRRRAE RRSSRSGGAF ERRVQTLKNK ARELSVLCDT SVCVICYDSD 60 GQLHHWPERP EDVRRIAANY RGLSEEDRQK HAVDLNGFLS SEATKANRAS KKPRLAPAYP 120 DSDGTVDNLS DDELGVLLSR IDAKLVQFQE RQSLVMDHGG RTEKDFEGRN EDVGSEKSAT 180 GPRGEENTDE IDIFRGLEDL DCGFQGFGFE SFGGSSMYI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010549187.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010549187.1	1e-160	PREDICTED: agamous-like MADS-box protein AGL103
STRING	XP_010549187.1	1e-160	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	2e-21	AGAMOUS-like 103