PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548856.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 272aa MW: 29424.7 Da PI: 4.5675

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548856.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.6e-05	155	176	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp+C+++F ++ H+r H XP_010548856.1 155 VCPYCHRVFGSWKAVFGHLRAH 176 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	156	176	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSNLEKQFLG SDAKGIEEAR KEETIAALMK VSAEENRFDD KEVEIEDEGE EAMMREIVLG 60 LPTLRLHDDF WDNPDQDDDN PDKDKPPVGN VVVAVGEEEA VIDKGRGENE KMKASGSESK 120 KRSKKPKVDG AGASGSGSAK KRAPELIDPP AGPPVCPYCH RVFGSWKAVF GHLRAHKERQ 180 HHGFLPPPRF SAAAEGIIIG CSGNDGDRSV SVIVAASDLG GGSGNGDGKG LDFDLNVMPN 240 EDSEENIVPN LKPKSFDLNK SPKKEDPEED QL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548856.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548856.1	0.0	PREDICTED: uncharacterized protein LOC104820184
STRING	XP_010548856.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	3e-25	C2H2 family protein