PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010548768.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

C2H2

Protein Properties

Length: 288aa MW: 32074.5 Da PI: 8.4649

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010548768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.7e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs++ L H++ H XP_010548768.1 78 YTCNFCKKEFSTSQALGGHQNAH 100 9*******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.51E-7	75	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	76	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.2E-6	77	102	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	12.03	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MESQVVSISS SSDSSSTKLV VAEKDSTKPN KVEPGAMNPK PGFQILSRDR IQNHHLGWGE 60 DHRHHHQEGG SSSRSRVYTC NFCKKEFSTS QALGGHQNAH KQEREWEKKR KQIELEYPSL 120 AFLHPYLNRS PFSSGSWINS LSYDNHLGSR FDAFFQKPSF YTPANNTVGY SSGYGTLAMV 180 PRVPPAADNN RVFAGKDLVL NDDDFSKNLF PSNGFPKDLH SNDVLPKDFA LRSNVGSSKS 240 LFIGDGRSRN LISIFGGNSS TTDKDLADKE DVQQKNVCAK EWGQDLSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010548768.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010548768.1	0.0	PREDICTED: zinc finger protein GIS-like
STRING	XP_010548768.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6363	18	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	2e-22	C2H2 family protein