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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | CPP | ||||||||
Protein Properties | Length: 572aa MW: 61355.8 Da PI: 7.4887 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.4 | 1.6e-14 | 117 | 157 | 1 | 42 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++kk+CnCk+s+Clk+YCeCfa+g++C+ C+C++C+N+ e+ XP_010548704.1 117 QKKKQCNCKHSRCLKLYCECFASGTYCDG-CNCTNCFNNVEN 157 589**************************.********9875 PP | |||||||
2 | TCR | 51 | 2.8e-16 | 202 | 241 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_010548704.1 202 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNYE 241 589***********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 1.6E-15 | 117 | 157 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 36.911 | 118 | 242 | IPR005172 | CRC domain |
Pfam | PF03638 | 9.8E-11 | 119 | 154 | IPR005172 | CRC domain |
SMART | SM01114 | 1.1E-19 | 202 | 243 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-12 | 205 | 240 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MGEGGDGGEF PPKKEQPEAS DFPVKNPARQ LDFTGGADAV LPENSHCKAS APAAVTATAV 60 KTSKAPGIGQ VRPTMPVVPL TPSSQSQVLH SSARLSKLES PKSRARPSVD ARDGTPQKKK 120 QCNCKHSRCL KLYCECFASG TYCDGCNCTN CFNNVENEAA RREAVDATLD RNPNAFRPKI 180 ASSPHGACDS REEVGEVLVL GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCLDCKNY 240 EGSEERQALF HGGEHANNMG YLQQEAKAAI TGAVGSCGFA SSPAPKRKKS QEIIFSQATE 300 DPSVHRLSHF HQANSGISTG PMSSRSPQVP VSRASGNVSL GPSKFLYRSL LADIIQPQDV 360 KALCSVLVAV AGEAAKTLAD ERIETEKRME VQKETFLASS AQDQGQGVKA EKVETGDGKP 420 CGEDSNSEDG RPLSPTTLEL MCDEEDTMFI LAASSNASVD ADSEKTSQLP NGKGLSEIYA 480 ERERIVLTKF WDCLHRLISY GELKESNCSS FARTHRGMAA ALETEAGFNQ GPTMNGVSRP 540 STQSTTKPPL PRLTATSVQN PSNTHLHKAP QV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-32 | 119 | 251 | 11 | 132 | Protein lin-54 homolog |
5fd3_B | 5e-32 | 119 | 251 | 11 | 132 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548704.1 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X1 | ||||
Swissprot | Q9SZD1 | 0.0 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | V4MD10 | 0.0 | V4MD10_EUTSA; Uncharacterized protein | ||||
STRING | XP_010548704.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1783 | 28 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29000.1 | 0.0 | Tesmin/TSO1-like CXC domain-containing protein |