PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010548376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TALE | ||||||||
Protein Properties | Length: 756aa MW: 82182.3 Da PI: 7.1378 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.5 | 2.7e-09 | 552 | 589 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + XP_010548376.1 552 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 589 664459******************************88 PP | |||||||
2 | BELL | 121.8 | 3e-39 | 411 | 482 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls++eeVd+rY++y+eq+q+v++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkda++ q+ XP_010548376.1 411 DRIEHQRRKVKLLSMVEEVDRRYNHYCEQMQMVMNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAVSAQL 482 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.5E-80 | 336 | 480 | IPR006563 | POX domain |
Pfam | PF07526 | 7.1E-50 | 341 | 479 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.568 | 530 | 593 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 533 | 597 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.38E-12 | 533 | 594 | No hit | No description |
SuperFamily | SSF46689 | 3.55E-17 | 535 | 600 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-29 | 536 | 599 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 550 | 589 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MGIATTPNII SSHHQSIKIL DNNSPSSSSS SSSSSSDLSM SQDYHHHHHN HQSIFTFSNG 60 FDRSSSTLTT HQSQHPPQQV GIDEDSASGA GIPVYETAGM LSEMFSFPGG PSASGELLDQ 120 SLPPSYNPTN SVTTRQLLEQ QHRHRHQNIP GMNAMDSATA AAAAMQLFLM NPPPPQPTTQ 180 RSPSPSPPQE STTNNNSTLH MLLPNHHQDY STAYNNNNSA IQHQLHQQFT WSDHQHHGQV 240 AASAEIGTVH VEGGQGLSLS LSSSLAAAAK AEEYRNIYYG NNHGMAGASP SSNTPAHHQY 300 NHFKGLLDSS HHHHHHHHQA VGHFVSPSAS SSSSSIAGIN ILRNSKYTKA AQELLEEFCS 360 VGRGHFKKSK YGRNTANPTT SGGGSGGGGG GGSSSPAAAA GKDHPPLSAA DRIEHQRRKV 420 KLLSMVEEVD RRYNHYCEQM QMVMNSFDLV MGYGAAVPYT ALAQKAMSRH FRCLKDAVSA 480 QLRHSCELLG EKDAAGSASG LTKGETPRLR LLEQSLRQQR AFHQMGMMEQ EAWRPQRGLP 540 ERSVNILRAW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMVEEMYQ 600 QEAKEEEEEE EEGEQEAQQQ QQRRKQQTNN STKPNNNNSS STVVQTKAQT PTPSTTTATA 660 TTATGHHQRS EINAHETDPS LLLPPSPSAA FAAAAVAAAD FGTANANTGD IGNPSGGIMR 720 FGTNPSGDVS LTLGLRHVGN MPEKEPSFSV RDFGGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 539 | 597 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 539 | 597 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 2e-16 | 539 | 597 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 2e-16 | 539 | 597 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 380 | 392 | SGGGSGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010548376.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010548375.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Refseq | XP_010548376.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 0.0 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | R0GH26 | 0.0 | R0GH26_9BRAS; Uncharacterized protein | ||||
STRING | XP_010548375.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-175 | BEL1-like homeodomain 2 |
Publications ? help Back to Top | |||
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