PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548267.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 283aa    MW: 30860.6 Da    PI: 8.7421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.22e-10164211455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  XP_010548267.1 164 SHSLAERARREKISERMKILQDLVPGC----NKVFGKALVLDEIINYIQSLQ 211
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.54E-9158215No hitNo description
SuperFamilySSF474598.9E-18158228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-18160229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.631160210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-8164211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-10166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDPGGMMNGG GPCNTSEIWQ FPRNGAPPMN SSIRGDGVPF DGPNLAQQFA GSNPNGTTTC  60
GGGPARLRNA LPPQARVARK RREATEDEAA KVVSTSNGNG AVGVCWQKDD DSKRQKTGRC  120
GDVGHGWKTE EETAGKGVEE KKQTAESPKD YIHVRARRGQ ATDSHSLAER ARREKISERM  180
KILQDLVPGC NKVFGKALVL DEIINYIQSL QRQVEFLSMK LEAVNSRIAP GLDVLPPKEL  240
AQQQFESSGL RSGLQPPRDY SRGESPEWLH LHMQLGGGFE RTS
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548267.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548267.10.0PREDICTED: transcription factor BPE isoform X1
RefseqXP_010548276.10.0PREDICTED: transcription factor BPE isoform X1
SwissprotQ0JXE74e-81BPE_ARATH; Transcription factor BPE
TrEMBLV4KDL11e-111V4KDL1_EUTSA; Uncharacterized protein
STRINGXP_010548267.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.11e-90BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]