PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548150.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Nin-like
Protein Properties Length: 968aa    MW: 107013 Da    PI: 6.4782
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548150.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.18.2e-29649700152
          RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     aek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  XP_010548150.1 649 AEKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 700
                     589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.006639720IPR003035RWP-RK domain
PfamPF020421.1E-24653700IPR003035RWP-RK domain
SuperFamilySSF542772.27E-23860955No hitNo description
Gene3DG3DSA:3.10.20.2409.8E-24868952No hitNo description
PROSITE profilePS5174529.649870953IPR000270PB1 domain
PfamPF005649.2E-19870952IPR000270PB1 domain
SMARTSM006662.9E-26870953IPR000270PB1 domain
CDDcd064071.24E-44871952No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MEGGGGDDGF SPNSSFGGFP ETAMDLDFME ELLFDGCWLE TTDGKSFQQP GGPSPSTSNP  60
MNDSSFLFGY QDPSNSDFGV NPSQNISNEE TKRKFPPSPP TYQKIEHLVV PNQSMNQEPL  120
DLAATSSVQS EKLLVEGAEV GRRWWIAPRA SSGASSSVKD RLLQAIQHVQ EAVLDKDFLI  180
QIWVPFQKGG KNFLTTLEQP HLVNPKYLSL QKYRHVSEKY SFPADEDSKE SVGLPGRVFL  240
GKLPEWTPDV RFFKSEEYPR IKEAQKCDVR GSLALPVFER GSGTCLGVVE IVTTTQKINY  300
RPELENICKA LEAVDLRSSS NLNPPSIEFL QVYSEFYQAA LPEISEFLVS VCRSFDLPLA  360
LTWAPCSRQG KSGSRHSDEN YSQCVSTIDF ACFVPDEQSK NFLEACSEHH LLQGEGVVGK  420
AFKMNKRCFV PDVTTFSKTN YPLVHHAKIF GLHAALAVPV KSKFTGAVEL VLEFFFPKAC  480
IDTEERKEML NLLSTTLERD FRSLNLVIDK EIEEEVILPV RETMVFSDNP LSGGEAGQNL  540
KPSTLTEISQ EESSWISHMM EANRKGKGVS LSWEYQKEEP KEEFKLTTGW VNNQTDQGHH  600
NFLQGVGNFQ QGPSSGPRID VDPSFVSASS GGGQTLGNRR PGEKRRTKAE KTIGLEVLRQ  660
YFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS  720
IQLDSFYTSF PELSSPNMSG SGPSLKSNDQ SKHFNTQTEN GVSPQGNAAP RSPPSSSCSQ  780
SSGSSTCCST GANKSTNTAN TSNTASPLVA ENTGGILKRA RSDAELHIVN QEETKGLPRT  840
QSHKTFNEHV LETLPPLPGS SSRNLKARGT IKVKATFGEA KVRFSLLPGW GFRELQQEIA  900
RRFTVDDIAR FDLKYLDDDR EWVLLTCDAD LEECIDIYRS YQSHTIKISI HQASQVKLGS  960
SFGSTAPS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548150.10.0PREDICTED: protein NLP2-like
RefseqXP_010548151.10.0PREDICTED: protein NLP2-like
RefseqXP_010548152.10.0PREDICTED: protein NLP2-like
RefseqXP_019058754.10.0PREDICTED: protein NLP2-like
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLR0GGQ70.0R0GGQ7_9BRAS; Uncharacterized protein
STRINGXP_010548150.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19982777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein