PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010548115.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 652aa    MW: 73718.6 Da    PI: 4.7154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010548115.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-13330375555
                     HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     + ++ErrRR+++N+++ +Lr+l+Pk +      Kl+ a+iLe A++++k+Lq
  XP_010548115.1 330 NLMAERRRRKKLNDRLYTLRSLVPKiS------KLDRASILEDAINFVKELQ 375
                     5589*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-1810161IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.202325374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.26E-13327377No hitNo description
SuperFamilySSF474591.96E-16328386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10330375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-15331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-15332386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MESTIQNLLE KLRSLVGTRG WDYCVLWKLS DDQRFVKWLG CCCGGAEEII SNFDGNDNGG  60
EGFCFSSGVP SRCRDVMFHH PRTKSCELLA NLPVSIPLES GIHTETLVSN QTAWLNFSDR  120
SEPEFLQETT CTRVLIPMPG GLVELFVTRQ VSEDQHIVDF VMRECNFLLD HTSIGALSMN  180
MMGAEKVESK PYEISEGFEH KGAKEDMNLS FVQLGEYEVE HIKLKNDYQE LGFLPENKHM  240
GMNPFNLVVA EDEIIGMEAL HNSMGVGAVD MHNVEGCDPS LQVKEQDDKE TFSHENGRLE  300
LGSDCSDQMD DEDDAKFKQE KIGKGSQAKN LMAERRRRKK LNDRLYTLRS LVPKISKLDR  360
ASILEDAINF VKELQNEAKE LQEELEDNLD TNDGSNRHNG DVAIGGNNDL VKGFHSGLSC  420
NTTNVPNLKQ DMDPNQSSNE KEQKMEPQVD VAQVDRKEFF VKVICEYKSG IFTKLIEAMD  480
SLGFEVTNAN TTRLLGLVSN VFKVKRKDSE MVQAEHVRDS LLEITRNTSR GWHGGGDDDD  540
HIGFHWAEDG FEETANTQDL KVTIDEISEL MNNVRLRQND KKNQRPRLLE KRKLGESTVQ  600
DLEIHGGKHD DTLVGNFARK DSEKPNRISE NSDIFTEAMA NYLKHVINVS NI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333340ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Plays a crucial role in tapetum development. Required for male fertility and pollen differentiation, especially during the post-meiotic transcriptional regulation of microspore development within the developing anther (PubMed:12535353). Binds E-box regions in the AHL16/TEK promoter. {ECO:0000269|PubMed:12535353, ECO:0000269|PubMed:24804694}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010548115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010548115.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLV4LJU20.0V4LJU2_EUTSA; Uncharacterized protein
STRINGXP_010548115.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Jiang J,Zhang Z,Cao J
    Pollen wall development: the associated enzymes and metabolic pathways.
    Plant Biol (Stuttg), 2013. 15(2): p. 249-63
    [PMID:23252839]
  3. Xu J, et al.
    ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1544-1556
    [PMID:24781116]
  4. Qian H, et al.
    Trace concentrations of imazethapyr (IM) affect floral organs development and reproduction in Arabidopsis thaliana: IM-induced inhibition of key genes regulating anther and pollen biosynthesis.
    Ecotoxicology, 2015. 24(1): p. 163-71
    [PMID:25348600]
  5. Xiong SX, et al.
    The transcription factors MS188 and AMS form a complex to activate the expression of CYP703A2 for sporopollenin biosynthesis in Arabidopsis thaliana.
    Plant J., 2016. 88(6): p. 936-946
    [PMID:27460657]
  6. Ferguson AC, et al.
    Biphasic regulation of the transcription factor ABORTED MICROSPORES (AMS) is essential for tapetum and pollen development in Arabidopsis.
    New Phytol., 2017. 213(2): p. 778-790
    [PMID:27787905]
  7. Lou Y, et al.
    Positive regulation of AMS by TDF1 and the formation of a TDF1-AMS complex are required for anther development in Arabidopsis thaliana.
    New Phytol., 2018. 217(1): p. 378-391
    [PMID:28940573]
  8. Bi H,Fan W,Zhang P
    C4 Protein of Sweet Potato Leaf Curl Virus Regulates Brassinosteroid Signaling Pathway through Interaction with AtBIN2 and Affects Male Fertility in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1689
    [PMID:29021807]