PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010547953.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | bHLH | ||||||||
Protein Properties | Length: 351aa MW: 39045.2 Da PI: 6.2358 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.4 | 5.5e-13 | 283 | 328 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l+P+ +k + a++L +AveYIk+Lq XP_010547953.1 283 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVEYIKDLQ 328 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.173 | 277 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-16 | 280 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.04E-12 | 281 | 330 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-14 | 282 | 337 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-10 | 283 | 328 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-11 | 283 | 333 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MDSSTHQHDV YDPNQIATGS GLLRFRSAPS PLLAAFIDDE KGGFDSDRLI SSLVSSNGGN 60 SDLGCPDLTE FELDKSPVSA EDAATPPPPP PSYSALPPHG SYQFLGTNHH HHTKPVESNL 120 VRQSSSPAGI FTNLSVQNGY GSFRSLLNYG TEEEQDPSPN GLKRHCSVSS RQPSSLGMLS 180 RISETETETI VSDFQQYGHW NDPSSSMQNF SSMKRESDDE GKWFSGGQNG EMDNRIQLLP 240 SRHLSLPKAS GSDMVLGDKY HQLQDSVPWN IRAKRGCATH PRSIAERVRR TRISERMRKL 300 QDLVPNMDKQ TNTADMLDLA VEYIKDLQRQ FKILSENRVN CKCFNTEEKT T |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010547953.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353163 | 4e-52 | AK353163.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-22-A04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010547953.1 | 0.0 | PREDICTED: transcription factor bHLH130-like | ||||
Swissprot | Q66GR3 | 1e-151 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | A0A1J3K3R5 | 1e-158 | A0A1J3K3R5_NOCCA; Uncharacterized protein | ||||
STRING | XP_010547953.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-144 | bHLH family protein |
Publications ? help Back to Top | |||
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