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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010547497.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 508aa MW: 53312.2 Da PI: 8.8629 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_010547497.1 61 FVCEICNKGFQRDQNLQLHRRGH 83 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00072 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_010547497.1 137 WKCEKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 60 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.39E-6 | 60 | 83 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 8.1E-5 | 61 | 83 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 102 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.5E-4 | 125 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.39E-6 | 132 | 157 | No hit | No description |
SMART | SM00355 | 140 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MPVDLDNSST VSGEASVSST GNQNPPPKSA VKKKRNLPGM PDPDAEVIAL SPKALLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKK VYVCPEPTCV HHEPSRALGD 120 LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT 180 HRAFCDALAE ESARNRNHSK KQNPEMGIRE TVDSDPKTPA TSQSSPPPYP HPHPPPAAAP 240 APASVPVGTV AQVDAKPAEI ISSSALSIRR SESPEISPEV IEEIPRTILN MNSNSNTAST 300 PSTNLSDNNG VFAGLFVSST ASPSLYSTTS TASPCLFAQS TSVEPISLCL STNHGSPLFG 360 SALQDPAQFP NPPPQPAMSA TALLQKAAQM GASGGSLLRG LGIVPSTSST MDLSSQDMSL 420 APGLGLGLPC GGGSSGSGLK ELMMGNSSVF GPKQTTLDFL GLGRAVGGGG SHGGGLSALI 480 TSIGSGGLDL TGSFGGGEFP GKDISRSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-35 | 133 | 194 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-35 | 133 | 194 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010547497.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010547497.1 | 0.0 | PREDICTED: protein indeterminate-domain 1-like isoform X2 | ||||
Swissprot | Q9LVQ7 | 0.0 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | R0EWK5 | 0.0 | R0EWK5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010547496.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-118 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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