PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547450.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GATA
Protein Properties Length: 291aa    MW: 32449.9 Da    PI: 6.4063
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547450.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.4e-19220254135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  XP_010547450.1 220 CSHCGAQKTPQWRAGPLGAKTLCNACGVRYKSGRL 254
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169929.3E-9612289IPR016679Transcription factor, GATA, plant
SuperFamilySSF577162.28E-14213276No hitNo description
SMARTSM004012.5E-15214268IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.701214250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.0E-15218252IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.33E-14219267No hitNo description
PfamPF003201.0E-16220254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440220245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MERVEGALKS SVRREIAMRL TPPAFIDDLL AVNSQNGVSP EDFSVDDLLD FSNDDIFAEE  60
DSEPRDRQER FSVSSEDPQD DENTLFRRTD FSAAGYFEPI PSGELSVPAD DVASLEWLSH  120
FVEDSFSEYS APDLTRTPKE KPTWLTGDRK HPVTPVNEDS CFKPAVPAKA RSKRTRTGGQ  180
VWSPSLSDSS SSSTSSSSSH WERPPVAKRQ KGEGGQQRRC SHCGAQKTPQ WRAGPLGAKT  240
LCNACGVRYK SGRLLPEYRP ACSPTFSSEL HSNHHRKVIE MRRKKETVVG F
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547449.10.0PREDICTED: GATA transcription factor 5-like isoform X1
RefseqXP_010547450.10.0PREDICTED: GATA transcription factor 5-like isoform X2
SwissprotQ9FH571e-115GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A178UHW11e-113A0A178UHW1_ARATH; GATA transcription factor
STRINGXP_010547449.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-116GATA transcription factor 5