PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010547448.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 1273aa    MW: 141030 Da    PI: 6.1832
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010547448.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.5e-0612521273426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G Ck G++C+F H+
  XP_010547448.1 1252 RICK-FYENGRCKKGASCSFWHP 1273
                      78**.6666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579037.75E-889162IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.1E-9109169IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.689114180IPR019787Zinc finger, PHD-finger
SMARTSM002491.5E-6116162IPR001965Zinc finger, PHD-type
CDDcd155683.47E-19116161No hitNo description
PROSITE patternPS013590117177IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0022329412IPR019835SWIB domain
Gene3DG3DSA:1.10.245.106.4E-23331413IPR003121SWIB/MDM2 domain
SuperFamilySSF475923.49E-20331408IPR003121SWIB/MDM2 domain
PfamPF022011.2E-13339407IPR003121SWIB/MDM2 domain
SMARTSM007198.9E-49466576IPR004343Plus-3 domain
PROSITE profilePS5136019.718466599IPR004343Plus-3 domain
SuperFamilySSF1590425.89E-28467596IPR004343Plus-3 domain
PfamPF031261.1E-18471574IPR004343Plus-3 domain
SuperFamilySSF552777.06E-16740797IPR003169GYF domain
PROSITE profilePS5082915.28744798IPR003169GYF domain
SMARTSM004447.6E-16745800IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-17746798IPR003169GYF domain
CDDcd000723.11E-17747799No hitNo description
PfamPF022135.7E-12747790IPR003169GYF domain
SuperFamilySSF902297.2E-612481272IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.33312481273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-412521272IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1273 aa     Download sequence    Send to blast
MDNHQQQLRQ GEPGKAALAR RGDGSVNGID LMRVDLRDEI GETGAPPIAG ASSTVGVVVG  60
VDGGLVDVSI EQEPKIVDGV SPAKRRRGRP PRGQAKTLPQ PRPPPPRKME DEEEDVCFIC  120
FDGGDLVLCD RRNCPKAYHP ACIKRDEAFF QTKAKWNCGW HICSTCQKAS SYMCYTCTYS  180
VCKRCIKDAN YVSVRGNMGL CAICMKTIML IENVAQSDKE TVKVDFDDKT SWEYLFKVYW  240
LCLKEKLSLT LSELTKATTP WKEVSSVAPK VELGNELCDH SYNRVHSSEN TCVDVAVDGT  300
KRRRTSDSPT LLNMNTKNSG DNQEKLPRAT EWATKELLEF VAYMKNGDIS VLSQFDVQTL  360
LLDYIKRKNL RDPREKSHVL CDSMLMRLFG KQRVGHFEML KLLEFHFLIQ ENSPNAKTMN  420
GEATHAIPHQ MVEDGVEETT RSDQRRKTRK KAGDGVRNAN KDEYAAIDVH NINLIYLRRK  480
FLETLLDDID KVHEKVVGTI VRIRVSGNDQ KLDIHRLVQV VGTCKATESY QIGTRTTDVM  540
LEILNLDKRE VISIDQLSDQ DITEDECKRL RQSIKCGLNK RFIVAEILEK AATLQSMRVS  600
EALEAEILKL NYLRDRASEN GYRKELRECI EKLELLKSPE ERRRRMQEIS EVHTDPSMNP  660
CHASAEDAEL GTIKQDNQIK TSSKNPQNKG DILNNLGNSA QRNFAAAFLR SKNVCTTFYA  720
DRDGSSNVQN SSDIQETVQE EEESEVWHYQ DPTGKTQGPF SMAQLRRWKS SGHFPPYLRI  780
WRSHEKQDDS VLLTDALAGR SNKANTLLSA SMPSQELKLA VESGLDVTAS SDKGVDNNHR  840
ENPTANNTSA SSCSSSYVVP VAVTIQNERQ KESLPSGVGK LASGGSHSFV KNIKDDGAHA  900
ASVSLNGSVH TPNLNQEIHF LDFSSPTPKS SPEDLETQAA ETIQSLSSCV LVKGPSGVTW  960
STATTAATPS SIVVSGTQLP EVPQQNGAVM PPALVVKPAE LSTEHVIATQ TSDNTQVAHH  1020
SSGWPAIVAD PDECDESVSD LLAEVEAMEQ NGLPSSPTST FHCDDDDDDD LTKGPEKDFF  1080
HPVARMSLAT ELCMSNGAEV DVLDSQNVYT SGTDPKESSK AMDAPPVSIH CETTTGLELP  1140
LFTQPVPPAS ISHDLTLTTT ALRLGSEATV EGGALDDISK TEPSHKSGNE GTARGNNGQQ  1200
QQQRNERERG TTGHRDRERQ WWNHGSSGYS HTNRQWPYSS SGHASHPPRG LRICKFYENG  1260
RCKKGASCSF WHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A4e-141061831081Histone-lysine N-methyltransferase NSD3
4gnd_C4e-141061831081Histone-lysine N-methyltransferase NSD3
4gne_A4e-141061831081Histone-lysine N-methyltransferase NSD3
4gnf_A4e-141061831081Histone-lysine N-methyltransferase NSD3
4gng_A4e-141061831081Histone-lysine N-methyltransferase NSD3
4gng_D4e-141061831081Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010547448.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1896275e-51AC189627.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS001M03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010547448.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLV4NGU00.0V4NGU0_EUTSA; Uncharacterized protein
STRINGXP_010547445.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding