PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

ERF

Protein Properties

Length: 157aa MW: 17682.2 Da PI: 9.5853

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010547342.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	55.2	1.7e-17	79	133	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +g+W+AeIr+ s+ +g++ r +lg+f+t eeAa a++ a+ ++ g XP_010547342.1 79 KFCGVRQRP-WGKWAAEIRCgRSQqRGRTDRRWLGTFDTTEEAALAYDIAAVQMIG 133 667****.******666666677999*****************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	2.5E-28	1	152	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	8.09E-22	78	140	No hit	No description
PROSITE profile	PS51032	19.73	79	141	IPR001471	AP2/ERF domain
SMART	SM00380	2.2E-24	79	147	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-24	79	140	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.62E-18	79	141	IPR016177	DNA-binding domain
PRINTS	PR00367	8.2E-9	80	91	IPR001471	AP2/ERF domain
Pfam	PF00847	8.4E-12	80	133	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.2E-9	107	123	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MRRVVRISCT YEEATESSSE EEDRRSERAH CRGKKLATEI VIDPLDSSSS QEACNARTSI 60 KIKIPKALLT VAAAVERKKF CGVRQRPWGK WAAEIRCGRS QQRGRTDRRW LGTFDTTEEA 120 ALAYDIAAVQ MIGPHAPTNF GYILGHIVTI REGYVLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	3e-15	74	140	9	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010547342.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010547342.1	1e-113	PREDICTED: ethylene-responsive transcription factor ERF070-like
Swissprot	Q9C995	4e-49	ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBL	A0A078JHW3	2e-50	A0A078JHW3_BRANA; BnaA02g35550D protein
TrEMBL	A0A398ADW5	2e-50	A0A398ADW5_BRACM; Uncharacterized protein
TrEMBL	M4CUR8	2e-50	M4CUR8_BRARP; Uncharacterized protein
STRING	XP_010547342.1	1e-112	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4000	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71130.1	3e-45	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]